SimulatedPedigree {Jacquard}R Documentation

Simulated SNP data according to a Pedigree

Description

A matrix containing 111 individuals (rows), pedigree information (first five columns) and 20.000 single nucleotide polymorphisms (remaining columns) coded in (0,1,2) format and simulated according to a pedigree of 20 unrelated founders with six posterior generations.

Usage

data("SimulatedPedigree")

Format

A data frame containing 111 rows and 20.005 columns.

Details

The SNP data was generated using the JGTeach package. The genotype counts in the object SimulatedPedigree represent the counts of the minor allele.

References

Goudet, J. (2022) JGTeach: JG Teaching material. R package version 0.1.9. https://github.com/jgx65

Graffelman, J., Weir, B.S. and Goudet, J. (2024) Estimation of Jacquard's genetic identity coefficients with bi-allelic variants by constrained least-squares. Preprint at bioRxiv doi:10.1101/2024.03.25.586682.

Examples

data(SimulatedPedigree)

[Package Jacquard version 1.0.2 Index]