get_significant_single_tissue_eqtls_by_location {gtexr} | R Documentation |
Get Significant Single Tissue eQTLs By Location
Description
Find significant single tissue eQTLs using Chromosomal Locations.
This service returns precomputed significant single tissue eQTLs.
Results may be filtered by tissue, and/or dataset.
By default, the service queries the latest GTEx release. Since this endpoint is used to support a third party program on the portal, the return structure is different from other endpoints and is not paginated.
Usage
get_significant_single_tissue_eqtls_by_location(
tissueSiteDetailId,
start,
end,
chromosome,
datasetId = "gtex_v8"
)
Arguments
tissueSiteDetailId |
String. The ID of the tissue of interest. Can be a
GTEx specific ID (e.g. "Whole_Blood"; use |
start |
Integer. |
end |
Integer. |
chromosome |
String. One of "chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrM", "chrX", "chrY". |
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
Value
A tibble.
See Also
Other Static Association Endpoints:
get_eqtl_genes()
,
get_fine_mapping()
,
get_independent_eqtl()
,
get_multi_tissue_eqtls()
,
get_significant_single_tissue_eqtls()
,
get_significant_single_tissue_ieqtls()
,
get_significant_single_tissue_isqtls()
,
get_significant_single_tissue_sqtls()
,
get_sqtl_genes()
Examples
## Not run:
get_significant_single_tissue_eqtls_by_location(
tissueSiteDetailId = "Artery_Aorta",
start = 10000,
end = 250000,
chromosome = "chr11")
## End(Not run)