get_median_gene_expression {gtexr} | R Documentation |
Get Median Gene Expression
Description
Find median gene expression data along with hierarchical clusters.
Returns median gene expression in tissues.
By default, this endpoint queries the latest GTEx release.
Usage
get_median_gene_expression(
gencodeIds,
datasetId = "gtex_v8",
tissueSiteDetailIds = NULL,
page = 0,
itemsPerPage = 250
)
Arguments
gencodeIds |
A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5"). |
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
tissueSiteDetailIds |
Character vector of IDs for tissues of interest.
Can be GTEx specific IDs (e.g. "Whole_Blood"; use
|
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). |
Value
A tibble.
See Also
Other Expression Data Endpoints:
get_clustered_median_exon_expression()
,
get_clustered_median_gene_expression()
,
get_clustered_median_junction_expression()
,
get_clustered_median_transcript_expression()
,
get_expression_pca()
,
get_gene_expression()
,
get_median_exon_expression()
,
get_median_junction_expression()
,
get_median_transcript_expression()
,
get_single_nucleus_gex()
,
get_single_nucleus_gex_summary()
,
get_top_expressed_genes()
Examples
## Not run:
get_median_gene_expression(gencodeIds = "ENSG00000132693.12")
## End(Not run)