get_top_expressed_genes {gtexr} | R Documentation |
Get Top Expressed Genes
Description
Find top expressed genes for a specified tissue.
Returns top expressed genes for a specified tissue in a dataset, sorted by median expression.
When the optional parameter filterMtGene is set to true, mitochondrial genes will be excluded from the results. By default, this service queries the latest GTEx release.
Usage
get_top_expressed_genes(
tissueSiteDetailId,
datasetId = "gtex_v8",
filterMtGene = TRUE,
page = 0,
itemsPerPage = 250
)
Arguments
tissueSiteDetailId |
String. The ID of the tissue of interest. Can be a
GTEx specific ID (e.g. "Whole_Blood"; use |
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
filterMtGene |
Logical. Exclude mitochondrial genes. |
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). |
Value
A tibble.
See Also
Other Expression Data Endpoints:
get_clustered_median_exon_expression()
,
get_clustered_median_gene_expression()
,
get_clustered_median_junction_expression()
,
get_clustered_median_transcript_expression()
,
get_expression_pca()
,
get_gene_expression()
,
get_median_exon_expression()
,
get_median_gene_expression()
,
get_median_junction_expression()
,
get_median_transcript_expression()
,
get_single_nucleus_gex()
,
get_single_nucleus_gex_summary()
Examples
## Not run:
get_top_expressed_genes(tissueSiteDetailId = "Artery_Aorta")
## End(Not run)