At_Age_TS_Variables |
At-Age Time Series Variables |
cm2inch |
Convert numeric values to a different scale |
demo |
Run an example MSE |
divide_10 |
Convert numeric values to a different scale |
divide_100 |
Convert numeric values to a different scale |
divide_1000 |
Convert numeric values to a different scale |
get_Assess_Estimates |
Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE |
get_Assess_Estimates.list |
Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE |
get_Assess_Estimates.MMSE |
Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE |
get_Assess_Estimates.MSE |
Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE |
get_at_Age |
Create a data.frame with at-age schedules by simulation and year |
get_at_Age.Hist |
Create a data.frame with at-age schedules by simulation and year |
get_at_Age.list |
Create a data.frame with at-age schedules by simulation and year |
get_at_Age.MMSE |
Create a data.frame with at-age schedules by simulation and year |
get_at_Age.MSE |
Create a data.frame with at-age schedules by simulation and year |
get_at_Age.multiHist |
Create a data.frame with at-age schedules by simulation and year |
get_at_age_ts |
Create a data.frame with time-series information by simulation and year |
get_at_Length |
Create a data.frame with at-length selectivity and retention schedules by simulation and year |
get_at_Length.multiHist |
Create a data.frame with at-length selectivity and retention schedules by simulation and year |
get_Biomass |
Create a data.frame with time-series information by simulation and year |
get_Biomass_at_Age |
Create a data.frame with time-series information by simulation and year |
get_F |
Create a data.frame with time-series information by simulation and year |
get_Landings |
Create a data.frame with time-series information by simulation and year |
get_LifeHistory |
Get Life History Parameters |
get_LifeHistory.Hist |
Get Life History Parameters |
get_LifeHistory.list |
Get Life History Parameters |
get_LifeHistory.MMSE |
Get Life History Parameters |
get_LifeHistory.MSE |
Get Life History Parameters |
get_Metadata |
Extract the meta-data from a 'Hist' or 'MSE' object |
get_Metadata.Hist |
Extract the meta-data from a 'Hist' or 'MSE' object |
get_Metadata.list |
Extract the meta-data from a 'Hist' or 'MSE' object |
get_Metadata.MMSE |
Extract the meta-data from a 'Hist' or 'MSE' object |
get_Metadata.MSE |
Extract the meta-data from a 'Hist' or 'MSE' object |
get_Number_at_Age |
Create a data.frame with time-series information by simulation and year |
get_Recruits |
Create a data.frame with time-series information by simulation and year |
get_Removals |
Create a data.frame with time-series information by simulation and year |
get_SB_SBMSY |
Create a data.frame with time-series information by simulation and year |
get_SSB |
Create a data.frame with time-series information by simulation and year |
get_SSB_at_Age |
Create a data.frame with time-series information by simulation and year |
get_ts |
Create a data.frame with time-series information by simulation and year |
get_ts.Hist |
Create a data.frame with time-series information by simulation and year |
get_ts.list |
Create a data.frame with time-series information by simulation and year |
get_ts.MMSE |
Create a data.frame with time-series information by simulation and year |
get_ts.MSE |
Create a data.frame with time-series information by simulation and year |
get_ts.multiHist |
Create a data.frame with time-series information by simulation and year |
get_Years |
Create a data.frame with Historical and Projection years |
get_Years.Hist |
Create a data.frame with Historical and Projection years |
get_Years.MMSE |
Create a data.frame with Historical and Projection years |
get_Years.MSE |
Create a data.frame with Historical and Projection years |
get_Years.multiHist |
Create a data.frame with Historical and Projection years |
inch2cm |
Convert numeric values to a different scale |
inch2mm |
Convert numeric values to a different scale |
kg2lb |
Convert numeric values to a different scale |
kg2mt |
Convert numeric values to a different scale |
kg2_1000lb |
Convert numeric values to a different scale |
lb2kg |
Convert numeric values to a different scale |
lb2mt |
Convert numeric values to a different scale |
mm2inch |
Convert numeric values to a different scale |
multiply_10 |
Convert numeric values to a different scale |
multiply_100 |
Convert numeric values to a different scale |
multiply_1000 |
Convert numeric values to a different scale |
plot_at_Age |
Plot at-Age schedules |
plot_Biomass |
Plots the median and quantiles of a time-series |
plot_F |
Plots the median and quantiles of a time-series |
plot_Landings |
Plots the median and quantiles of a time-series |
plot_Length |
Plot at-Age schedules |
plot_LifeHistory |
Plots the median and quantiles of a time-series |
plot_Maturity |
Plot at-Age schedules |
plot_N.Mortality |
Plot at-Age schedules |
plot_Recruits |
Plots the median and quantiles of a time-series |
plot_Removals |
Plots the median and quantiles of a time-series |
plot_Retention |
Plot at-Age schedules |
plot_Select |
Plot at-Age schedules |
plot_Select_Maturity |
Plot at-Age schedules |
plot_SSB |
Plots the median and quantiles of a time-series |
plot_TS |
Plots the median and quantiles of a time-series |
plot_Weight |
Plot at-Age schedules |
theme_default |
A ggplot2 theme |
TS_Variables |
Time Series Variables |
userguide |
Open the openMSE Documentation website |
valid_at_age_ts_variables |
Create a data.frame with time-series information by simulation and year |
valid_ts_variables |
Create a data.frame with time-series information by simulation and year |