at |
Date from which to take the version. Default: NULL
|
attr |
logical if a package and its version should be added as an attribute of data.frame or for FALSE as an additional record. Default: TRUE
|
base |
logical if to add base packages too. If TRUE then pacs::pacs_base() are taken into account. Default: FALSE
|
built |
logical if to add an R version under which each package was installed.
Useful mainly for a local usage.
Packages installed with a previous version of R could not work correctly with the new version of R. Default: FALSE
|
checkred |
list with two named fields, scope and flavor . scope of R CRAN check pages statuses to consider, any of c("ERROR", "FAIL", "WARN", "NOTE") .
flavor is a vector of CRAN machines to consider, which might be retrieved with pacs::cran_flavors()$Flavor .
By default an empty scope field deactivated assessment for checkred column, and NULL flavor will results in checking all machines.
Default: list(scope = character(0), flavor = NULL)
|
description_v |
logical if the dependencies version should be taken from description files, minimal required. By default installed versions are taken. Default: FALSE
|
exclude_joint |
integer exclude packages which are dependencies of at least N other packages, not count main package dependencies. Default: 0
|
file |
character file name to read. Possible values are DESCRIPTION , NEWS and NAMESPACE .
|
fields |
character vector listing the types of dependencies, a subset of c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances") .
Character string "all" is shorthand for that vector, character string "most" for the same vector without "Enhances", character string "strong" (default) for the first three elements of that vector.
Default: c("Depends", "Imports", "LinkingTo")
|
flavors |
character vector of CRAN server names to consider, possible names could be get with pacs::cran_flavors()$Flavor .
The pacs::match_flavors() function could be used to get CRAN server names matched for your local OS .
By default all CRAN machines are considered NULL value. Default: NULL
|
from |
Date the lower limit. Default: NULL
|
lib.loc |
character vector of search paths with local packages. Default: .libPaths()
|
lifeduration |
logical if to assess life duration for each package in the library.
For installed newest releases of packages, a local evaluation is used.
MEATCRAN CRANDB is used for libraries with less than 500 packages.
Otherwise the direct web page download from CRAN is used.
Default: 'FALSE“
|
limit |
numeric at least days to treat as healthy, ">=limit". Default: 14
|
local |
logical if to use local repository (or newest remote packages). Default: FALSE
|
na.rm |
logical if to remove NA values.
|
new |
character a new version of package, default newest version. Default: NULL
|
old |
character an old version of package, default local version. Default: NULL
|
pac |
character a package name.
|
pacs |
character vector of packages names.
|
path |
character path to the shiny app. Default: "."
|
repos |
character vector of repositories URLs to use. By default checking CRAN and newest Bioconductor per R version. Default pacs::biocran_repos()
|
recursive |
logical if to assess the dependencies recursively. Default: TRUE
|
scope |
character vector scope of the check, accepted values c("ERROR", "FAIL", "WARN", "NOTE"). Default: c("ERROR", "FAIL")
|
source |
character one of c("cran", "crandb") .
Using the MEATCRAN CRANDB or the direct web page download from CRAN.
When "crandb" is set then options(pacs.crandb_ntry = 3) and options(pacs.crandb_nsleep = 0.001) can be used to control the fetch.
"pacs.crandb_ntry" can be used to set the maximum number of try outs, by default 3.
"pacs.crandb_nsleep" can be used to set the sleep duration between fetch try outs, by default 0.001.
Default: "cran"
|
startup |
logical include only startup packages. Default: FALSE
|
to |
Date the upper limit. Default: NULL
|
vec |
character vector.
|
version |
character version of a package. Default: NULL
|
versions |
character vector of packages versions.
|