%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  stability
%global packver   0.6.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.6.0
Release:          1%{?dist}%{?buildtag}
Summary:          Stability Analysis of Genotype by Environment Interaction (GEI)

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1
Requires:         R-core >= 3.1
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggfortify 
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggfortify 
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-matrixStats 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-scales 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 

%description
Provides functionalities for performing stability analysis of genotype by
environment interaction (GEI) to identify superior and stable genotypes
across diverse environments. It implements Eberhart and Russell’s ANOVA
method (1966)(<doi:10.2135/cropsci1966.0011183X000600010011x>), Finlay and
Wilkinson’s Joint Linear Regression method (1963)
(<doi:10.1071/AR9630742>), Wricke’s Ecovalence (1962, 1964), Shukla’s
stability variance parameter (1972) (<doi:10.1038/hdy.1972.87>), Kang’s
simultaneous selection for high yield and stability (1991)
(<doi:10.2134/agronj1991.00021962008300010037x>), Additive Main Effects
and Multiplicative Interaction (AMMI) method and Genotype plus Genotypes
by Environment (GGE) Interaction methods.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}