%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PRISMA
%global packver   0.2-7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.7
Release:          1%{?dist}%{?buildtag}
Summary:          Protocol Inspection and State Machine Analysis

License:          GPL (>= 2.0)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-gplots 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-ggplot2 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-gplots 
Requires:         R-methods 
Requires:         R-CRAN-ggplot2 

%description
Loads and processes huge text corpora processed with the sally toolbox
(<http://www.mlsec.org/sally/>). sally acts as a very fast preprocessor
which splits the text files into tokens or n-grams. These output files can
then be read with the PRISMA package which applies testing-based token
selection and has some replicate-aware, highly tuned non-negative matrix
factorization and principal component analysis implementation which allows
the processing of very big data sets even on desktop machines.

%prep
%setup -q -c -n %{packname}
find %{packname} -type f -exec sed -Ei 's@#!( )*(/usr)*/bin/(env )*python@#!/usr/bin/python3@g' {} \;
# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}