Warning: Permanently added '18.206.201.196' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8100652-fedora-40-x86_64 --chroot fedora-40-x86_64 Version: 0.73 PID: 7497 Logging PID: 7498 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8100652, 'buildroot_pkgs': [], 'chroot': 'fedora-40-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '8fb7cd5a9dce5fe062184fee5466a1fe205a04c8', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-iCellR', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-iCellR', 'package_version': '1.6.7-1.copr8100652', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-40-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8100652-fedora-40-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-iCellR /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-iCellR', '/var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR'... Running: git checkout 8fb7cd5a9dce5fe062184fee5466a1fe205a04c8 -- cmd: ['git', 'checkout', '8fb7cd5a9dce5fe062184fee5466a1fe205a04c8', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR rc: 0 stdout: stderr: Note: switching to '8fb7cd5a9dce5fe062184fee5466a1fe205a04c8'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 8fb7cd5 automatic import of R-CRAN-iCellR Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading iCellR_1.6.7.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o iCellR_1.6.7.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-iCellR/iCellR_1.6.7.tar.gz/md5/11bf4c567e79f639c9d0fe4b9a39fe87/iCellR_1.6.7.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 223k 100 223k 0 0 16.2M 0 --:--:-- --:--:-- --:--:-- 16.7M INFO: Reading stdout from command: md5sum iCellR_1.6.7.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR/R-CRAN-iCellR.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727859359.423951 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR/R-CRAN-iCellR.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727859359.423951 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR/R-CRAN-iCellR.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1727859359.423951/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 54.9 MiB/s | 12.5 MiB | 00m00s fedora 100% | 33.0 MiB/s | 20.8 MiB | 00m01s Copr repository 100% | 177.5 MiB/s | 12.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.4-8.fc40 updates 5.8 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 40-39 updates 19.1 KiB findutils x86_64 1:4.9.0-9.fc40 updates 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39-22.fc40 updates 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 288-1.fc40 updates 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-3.fc40 updates 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40.1-1.fc40 updates 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc40 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.27-1.fc40 updates 66.3 KiB ansible-srpm-macros noarch 1-14.fc40 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc40 updates 327.4 KiB authselect x86_64 1.5.0-5.fc40 fedora 153.6 KiB authselect-libs x86_64 1.5.0-5.fc40 fedora 818.3 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.41-37.fc40 updates 26.4 MiB binutils-gold x86_64 2.41-37.fc40 updates 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc40 updates 2.4 MiB coreutils-common x86_64 9.4-8.fc40 updates 11.4 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20240725-1.git28d3e2d.fc40 updates 153.3 KiB curl x86_64 8.6.0-10.fc40 updates 738.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-14.fc40 fedora 199.0 KiB dwz x86_64 0.15-6.fc40 fedora 290.9 KiB ed x86_64 1.20.2-1.fc40 updates 146.9 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.191-4.fc40 fedora 2.5 MiB elfutils-debuginfod-client x86_64 0.191-4.fc40 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-4.fc40 fedora 1.8 KiB elfutils-libelf x86_64 0.191-4.fc40 fedora 1.2 MiB elfutils-libs x86_64 0.191-4.fc40 fedora 646.1 KiB fedora-gpg-keys noarch 40-2 updates 124.7 KiB fedora-release noarch 40-39 updates 0.0 B fedora-release-identity-basic noarch 40-39 updates 654.0 B fedora-repos noarch 40-2 updates 4.9 KiB file x86_64 5.45-4.fc40 fedora 103.5 KiB file-libs x86_64 5.45-4.fc40 fedora 9.9 MiB filesystem x86_64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.3.2-1.fc40 updates 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 15.1-1.fc40 updates 13.0 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9-1.fc40 fedora 716.0 B glibc x86_64 2.39-22.fc40 updates 6.6 MiB glibc-common x86_64 2.39-22.fc40 updates 1.0 MiB glibc-gconv-extra x86_64 2.39-22.fc40 updates 7.8 MiB gmp x86_64 1:6.2.1-8.fc40 fedora 794.6 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.5.0-1.fc40 fedora 60.6 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-23.fc40 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.3-1.fc40 updates 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-4.fc40 updates 914.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40.1-1.fc40 updates 258.5 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc40 updates 219.8 KiB libcap-ng x86_64 0.8.4-4.fc40 fedora 73.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.6.0-10.fc40 updates 776.8 KiB libeconf x86_64 0.6.2-2.fc40 updates 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40.1-1.fc40 updates 362.9 KiB libffi x86_64 3.4.4-7.fc40 fedora 81.6 KiB libgcc x86_64 14.2.1-3.fc40 updates 274.6 KiB libgomp x86_64 14.2.1-3.fc40 updates 523.6 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40.1-1.fc40 updates 351.8 KiB libnghttp2 x86_64 1.59.0-3.fc40 updates 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.1-2.fc40 updates 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.7-5.fc40 updates 177.0 KiB libsemanage x86_64 3.7-2.fc40 updates 293.5 KiB libsepol x86_64 3.7-2.fc40 updates 817.9 KiB libsmartcols x86_64 2.40.1-1.fc40 updates 180.4 KiB libssh x86_64 0.10.6-5.fc40 fedora 509.3 KiB libssh-config noarch 0.10.6-5.fc40 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc40 updates 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.5-0.fc40 updates 202.7 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc40 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40.1-1.fc40 updates 37.4 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-5.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.8-1.fc40 updates 1.7 MiB libzstd x86_64 1.5.6-1.fc40 updates 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-4.fc40 updates 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 fedora 104.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.2-3.fc40 updates 7.8 MiB p11-kit x86_64 0.25.5-1.fc40 updates 2.2 MiB p11-kit-trust x86_64 0.25.5-1.fc40 updates 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.1-3.fc40 updates 1.8 MiB pam-libs x86_64 1.6.1-3.fc40 updates 135.0 KiB pcre2 x86_64 10.44-1.fc40 updates 653.5 KiB pcre2-syntax noarch 10.44-1.fc40 updates 251.6 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.1-2.fc40 updates 82.9 KiB pkgconf-m4 noarch 2.1.1-2.fc40 updates 13.9 KiB pkgconf-pkg-config x86_64 2.1.1-2.fc40 updates 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc40 updates 1.9 KiB python-srpm-macros noarch 3.12-8.fc40 updates 50.6 KiB qt5-srpm-macros noarch 5.15.15-1.fc40 updates 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc40 updates 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.7.0-1.fc40 updates 2.4 MiB rust-srpm-macros noarch 26.3-1.fc40 updates 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 fedora 1.4 MiB systemd-libs x86_64 255.12-1.fc40 updates 1.9 MiB util-linux-core x86_64 2.40.1-1.fc40 updates 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 fedora 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc40 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc40 updates 134.0 KiB zstd x86_64 1.5.6-1.fc40 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 152 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). [ 1/152] bzip2-0:1.0.8-18.fc40.x86_64 100% | 3.7 MiB/s | 52.4 KiB | 00m00s [ 2/152] cpio-0:2.15-1.fc40.x86_64 100% | 15.0 MiB/s | 292.2 KiB | 00m00s [ 3/152] diffutils-0:3.10-5.fc40.x86_6 100% | 49.5 MiB/s | 405.6 KiB | 00m00s [ 4/152] bash-0:5.2.26-3.fc40.x86_64 100% | 69.5 MiB/s | 1.8 MiB | 00m00s [ 5/152] grep-0:3.11-7.fc40.x86_64 100% | 41.9 MiB/s | 300.2 KiB | 00m00s [ 6/152] gzip-0:1.13-1.fc40.x86_64 100% | 83.3 MiB/s | 170.6 KiB | 00m00s [ 7/152] rpm-build-0:4.19.1.1-1.fc40.x 100% | 38.2 MiB/s | 78.2 KiB | 00m00s [ 8/152] patch-0:2.7.6-24.fc40.x86_64 100% | 42.5 MiB/s | 130.7 KiB | 00m00s [ 9/152] info-0:7.1-2.fc40.x86_64 100% | 59.4 MiB/s | 182.3 KiB | 00m00s [ 10/152] sed-0:4.9-1.fc40.x86_64 100% | 103.6 MiB/s | 318.2 KiB | 00m00s [ 11/152] unzip-0:6.0-63.fc40.x86_64 100% | 60.1 MiB/s | 184.5 KiB | 00m00s [ 12/152] tar-2:1.35-3.fc40.x86_64 100% | 167.3 MiB/s | 856.6 KiB | 00m00s [ 13/152] which-0:2.21-41.fc40.x86_64 100% | 20.2 MiB/s | 41.4 KiB | 00m00s [ 14/152] xz-1:5.4.6-3.fc40.x86_64 100% | 108.9 MiB/s | 557.4 KiB | 00m00s [ 15/152] fedora-release-common-0:40-39 100% | 6.9 MiB/s | 21.3 KiB | 00m00s [ 16/152] coreutils-0:9.4-8.fc40.x86_64 100% | 126.9 MiB/s | 1.1 MiB | 00m00s [ 17/152] findutils-1:4.9.0-9.fc40.x86_ 100% | 68.6 MiB/s | 491.4 KiB | 00m00s [ 18/152] gawk-0:5.3.0-3.fc40.x86_64 100% | 119.0 MiB/s | 1.1 MiB | 00m00s [ 19/152] glibc-minimal-langpack-0:2.39 100% | 34.6 MiB/s | 106.3 KiB | 00m00s [ 20/152] redhat-rpm-config-0:288-1.fc4 100% | 20.0 MiB/s | 82.1 KiB | 00m00s [ 21/152] util-linux-0:2.40.1-1.fc40.x8 100% | 200.7 MiB/s | 1.2 MiB | 00m00s [ 22/152] shadow-utils-2:4.15.1-3.fc40. 100% | 146.9 MiB/s | 1.3 MiB | 00m00s [ 23/152] filesystem-0:3.18-8.fc40.x86_ 100% | 135.8 MiB/s | 1.1 MiB | 00m00s [ 24/152] ncurses-libs-0:6.4-12.2024012 100% | 108.2 MiB/s | 332.5 KiB | 00m00s [ 25/152] bzip2-libs-0:1.0.8-18.fc40.x8 100% | 20.0 MiB/s | 40.9 KiB | 00m00s [ 26/152] libattr-0:2.5.2-3.fc40.x86_64 100% | 8.8 MiB/s | 18.0 KiB | 00m00s 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100% | 39.5 MiB/s | 242.9 KiB | 00m00s [ 92/152] forge-srpm-macros-0:0.3.2-1.f 100% | 19.2 MiB/s | 19.7 KiB | 00m00s [ 93/152] pcre2-syntax-0:10.44-1.fc40.n 100% | 73.1 MiB/s | 149.8 KiB | 00m00s [ 94/152] mpfr-0:4.2.1-4.fc40.x86_64 100% | 113.6 MiB/s | 348.9 KiB | 00m00s [ 95/152] libblkid-0:2.40.1-1.fc40.x86_ 100% | 60.7 MiB/s | 124.3 KiB | 00m00s [ 96/152] libstdc++-0:14.2.1-3.fc40.x86 100% | 144.3 MiB/s | 886.5 KiB | 00m00s [ 97/152] libuuid-0:2.40.1-1.fc40.x86_6 100% | 6.9 MiB/s | 28.4 KiB | 00m00s [ 98/152] libmount-0:2.40.1-1.fc40.x86_ 100% | 37.8 MiB/s | 154.6 KiB | 00m00s [ 99/152] libsmartcols-0:2.40.1-1.fc40. 100% | 40.7 MiB/s | 83.3 KiB | 00m00s [100/152] audit-libs-0:4.0.2-1.fc40.x86 100% | 40.9 MiB/s | 125.8 KiB | 00m00s [101/152] libfdisk-0:2.40.1-1.fc40.x86_ 100% | 77.8 MiB/s | 159.4 KiB | 00m00s [102/152] systemd-libs-0:255.12-1.fc40. 100% | 98.7 MiB/s | 707.2 KiB | 00m00s [103/152] pam-0:1.6.1-3.fc40.x86_64 100% | 135.1 MiB/s | 553.4 KiB | 00m00s [104/152] pam-libs-0:1.6.1-3.fc40.x86_6 100% | 18.6 MiB/s | 57.1 KiB | 00m00s [105/152] libnsl2-0:2.0.1-1.fc40.x86_64 100% | 14.4 MiB/s | 29.6 KiB | 00m00s [106/152] gdbm-libs-1:1.23-6.fc40.x86_6 100% | 27.4 MiB/s | 56.2 KiB | 00m00s [107/152] authselect-0:1.5.0-5.fc40.x86 100% | 47.6 MiB/s | 146.2 KiB | 00m00s [108/152] libpwquality-0:1.4.5-9.fc40.x 100% | 58.4 MiB/s | 119.7 KiB | 00m00s [109/152] authselect-libs-0:1.5.0-5.fc4 100% | 106.8 MiB/s | 218.6 KiB | 00m00s [110/152] cracklib-0:2.9.11-5.fc40.x86_ 100% | 45.2 MiB/s | 92.5 KiB | 00m00s [111/152] libeconf-0:0.6.2-2.fc40.x86_6 100% | 31.2 MiB/s | 32.0 KiB | 00m00s [112/152] pyproject-srpm-macros-0:1.15. 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [113/152] libsemanage-0:3.7-2.fc40.x86_ 100% | 56.7 MiB/s | 116.1 KiB | 00m00s [114/152] python-srpm-macros-0:3.12-8.f 100% | 11.4 MiB/s | 23.4 KiB | 00m00s [115/152] qt5-srpm-macros-0:5.15.15-1.f 100% | 4.3 MiB/s | 8.9 KiB | 00m00s [116/152] qt6-srpm-macros-0:6.7.2-2.fc4 100% | 2.9 MiB/s | 9.0 KiB | 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100% | 239.4 MiB/s | 4.3 MiB | 00m00s [143/152] libssh-0:0.10.6-5.fc40.x86_64 100% | 25.7 MiB/s | 210.6 KiB | 00m00s [144/152] openldap-0:2.6.7-1.fc40.x86_6 100% | 41.4 MiB/s | 254.3 KiB | 00m00s [145/152] libssh-config-0:0.10.6-5.fc40 100% | 8.8 MiB/s | 9.0 KiB | 00m00s [146/152] libunistring-0:1.1-7.fc40.x86 100% | 177.6 MiB/s | 545.5 KiB | 00m00s [147/152] publicsuffix-list-dafsa-0:202 100% | 18.9 MiB/s | 58.1 KiB | 00m00s [148/152] libtool-ltdl-0:2.4.7-10.fc40. 100% | 17.7 MiB/s | 36.2 KiB | 00m00s [149/152] libevent-0:2.1.12-12.fc40.x86 100% | 83.7 MiB/s | 257.2 KiB | 00m00s [150/152] cyrus-sasl-lib-0:2.1.28-19.fc 100% | 128.5 MiB/s | 789.3 KiB | 00m00s [151/152] fedora-release-identity-basic 100% | 11.3 MiB/s | 11.6 KiB | 00m00s [152/152] libnghttp2-0:1.59.0-3.fc40.x8 100% | 36.8 MiB/s | 75.3 KiB | 00m00s -------------------------------------------------------------------------------- [152/152] Total 100% | 81.6 MiB/s | 52.8 MiB | 00m01s Running transaction Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. [ 1/154] Verify package files 100% | 687.0 B/s | 152.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 [ 2/154] Prepare transaction 100% | 3.6 KiB/s | 152.0 B | 00m00s [ 3/154] Installing libgcc-0:14.2.1-3. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-3.fc40.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-3.fc40.x86_64 [ 4/154] Installing crypto-policies-0: 100% | 36.3 MiB/s | 185.9 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240725-1.git28d3e2d.fc40 >>> Stop post-install scriptlet: crypto-policies-0:20240725-1.git28d3e2d.fc40.no [ 5/154] Installing fedora-release-ide 100% | 890.6 KiB/s | 912.0 B | 00m00s [ 6/154] Installing fedora-gpg-keys-0: 100% | 55.2 MiB/s | 169.7 KiB | 00m00s [ 7/154] Installing fedora-repos-0:40- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 8/154] Installing fedora-release-com 100% | 22.7 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Installing ncurses-base-0:6.4 100% | 85.8 MiB/s | 351.6 KiB | 00m00s [ 21/154] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 22/154] Installing ncurses-libs-0:6.4 100% | 189.4 MiB/s | 969.7 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.39-22.fc40.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.39-22.fc40.x86_64 [ 23/154] Installing glibc-0:2.39-22.fc 100% | 213.8 MiB/s | 6.6 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.39-22.fc40.x86_64 >>> Stop post-install scriptlet: glibc-0:2.39-22.fc40.x86_64 [ 24/154] Installing bash-0:5.2.26-3.fc 100% | 388.6 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64 [ 25/154] Installing glibc-common-0:2.3 100% | 171.4 MiB/s | 1.0 MiB | 00m00s [ 26/154] Installing glibc-gconv-extra- 100% | 232.0 MiB/s | 7.9 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.39-22.fc40.x86_64 >>> Stop 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pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/154] Installing util-linux-0:2.40. 100% | 156.0 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.1-1.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.1-1.fc40.x86_64 [153/154] Installing which-0:2.21-41.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [154/154] Installing info-0:7.1-2.fc40. 100% | 381.0 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0 >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.27-1.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0.2-1.fc40.x86_64 authselect-1.5.0-5.fc40.x86_64 authselect-libs-1.5.0-5.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-37.fc40.x86_64 binutils-gold-2.41-37.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc40.noarch coreutils-9.4-8.fc40.x86_64 coreutils-common-9.4-8.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240725-1.git28d3e2d.fc40.noarch curl-8.6.0-10.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-4.fc40.x86_64 elfutils-debuginfod-client-0.191-4.fc40.x86_64 elfutils-default-yama-scope-0.191-4.fc40.noarch elfutils-libelf-0.191-4.fc40.x86_64 elfutils-libs-0.191-4.fc40.x86_64 fedora-gpg-keys-40-2.noarch fedora-release-40-39.noarch fedora-release-common-40-39.noarch fedora-release-identity-basic-40-39.noarch fedora-repos-40-2.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-9.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.2-1.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-15.1-1.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9-1.fc40.noarch glibc-2.39-22.fc40.x86_64 glibc-common-2.39-22.fc40.x86_64 glibc-gconv-extra-2.39-22.fc40.x86_64 glibc-minimal-langpack-2.39-22.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch gpg-pubkey-a15b79cc-63d04c2c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-1.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-4.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.1-1.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-10.fc40.x86_64 libeconf-0.6.2-2.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40.1-1.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.2.1-3.fc40.x86_64 libgomp-14.2.1-3.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.1-1.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-2.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.7-5.fc40.x86_64 libsemanage-3.7-2.fc40.x86_64 libsepol-3.7-2.fc40.x86_64 libsmartcols-2.40.1-1.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.2.1-3.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.5-0.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40.1-1.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.8-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.2-3.fc40.x86_64 p11-kit-0.25.5-1.fc40.x86_64 p11-kit-trust-0.25.5-1.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-3.fc40.x86_64 pam-libs-1.6.1-3.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc40.x86_64 pcre2-syntax-10.44-1.fc40.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-2.fc40.x86_64 pkgconf-m4-2.1.1-2.fc40.noarch pkgconf-pkg-config-2.1.1-2.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.15.0-1.fc40.noarch python-srpm-macros-3.12-8.fc40.noarch qt5-srpm-macros-5.15.15-1.fc40.noarch qt6-srpm-macros-6.7.2-2.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-1.fc40.x86_64 rust-srpm-macros-26.3-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-3.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.12-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.1-1.fc40.x86_64 util-linux-core-2.40.1-1.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-x86_64-1727859359.423951/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1727859359.423951/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-28l1e5qt/R-CRAN-iCellR/R-CRAN-iCellR.spec) Config(child) 0 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm) Config(fedora-40-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1727859359.423951/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm Start: build setup for R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Updating and loading repositories: updates 100% | 790.3 KiB/s | 28.5 KiB | 00m00s fedora 100% | 171.2 KiB/s | 30.7 KiB | 00m00s Copr repository 100% | 59.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 45.7 MiB/s | 12.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-Hmisc x86_64 5.1.3-1.fc40.copr7501288 copr_base 5.2 MiB R-CRAN-Matrix x86_64 1.7.0-1.fc40.copr7382390 copr_base 8.0 MiB R-CRAN-NbClust noarch 3.0.1-1.fc40.copr7351789 copr_base 140.2 KiB R-CRAN-RANN x86_64 2.6.2-1.fc40.copr7942082 copr_base 95.5 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc40.copr7349948 copr_base 63.6 KiB R-CRAN-Rcpp x86_64 1.0.13-1.fc40.copr7745410 copr_base 8.4 MiB R-CRAN-Rtsne x86_64 0.17-1.fc40.copr8100532 copr_base 258.1 KiB R-CRAN-ape x86_64 5.8-1.fc40.copr7356134 copr_base 4.3 MiB R-CRAN-data.table x86_64 1.16.0-1.fc40.copr7948814 copr_base 3.9 MiB R-CRAN-ggdendro noarch 0.2.0-1.fc40.copr8099606 copr_base 335.6 KiB R-CRAN-ggplot2 noarch 3.5.1-1.fc40.copr7361224 copr_base 7.1 MiB R-CRAN-ggpubr noarch 0.6.0-1.fc40.copr7370857 copr_base 2.6 MiB R-CRAN-ggrepel x86_64 0.9.6-1.fc40.copr7995994 copr_base 454.1 KiB R-CRAN-gridExtra noarch 2.3-3.fc40.copr7357925 copr_base 1.6 MiB R-CRAN-hdf5r x86_64 1.3.11-1.fc40.copr7716129 copr_base 3.3 MiB R-CRAN-htmlwidgets noarch 1.6.4-1.fc40.copr7361223 copr_base 2.0 MiB R-CRAN-igraph x86_64 2.0.3-1.fc40.copr7357926 copr_base 10.0 MiB R-CRAN-jsonlite x86_64 1.8.9-1.fc40.copr8046217 copr_base 2.3 MiB R-CRAN-knitr noarch 1.48-1.fc40.copr7716131 copr_base 1.7 MiB R-CRAN-pheatmap noarch 1.0.12-3.fc40.copr7358063 copr_base 97.6 KiB R-CRAN-plotly noarch 4.10.4-1.fc40.copr7364942 copr_base 6.7 MiB R-CRAN-plyr x86_64 1.8.9-1.fc40.copr7353597 copr_base 1.1 MiB R-CRAN-png x86_64 0.1.8-1.fc40.copr7350042 copr_base 70.2 KiB R-CRAN-progress noarch 1.2.3-1.fc40.copr7359533 copr_base 118.0 KiB R-CRAN-reshape noarch 0.8.9-1.fc40.copr7356091 copr_base 309.5 KiB R-CRAN-scatterplot3d noarch 0.3.44-1.fc40.copr7350114 copr_base 365.0 KiB R-CRAN-shiny noarch 1.9.1-1.fc40.copr7818056 copr_base 13.5 MiB R-CRAN-uwot x86_64 0.2.2-1.fc40.copr7358737 copr_base 1.8 MiB R-core x86_64 4.4.1-5.fc40 updates 101.6 MiB R-devel x86_64 4.4.1-5.fc40 updates 0.0 B Installing dependencies: R-CRAN-Deriv noarch 4.1.6-1.fc40.copr8019418 copr_base 180.5 KiB R-CRAN-FNN x86_64 1.1.4.1-1.fc40.copr8059699 copr_base 231.5 KiB R-CRAN-Formula noarch 1.2.5-1.fc40.copr7350002 copr_base 205.4 KiB R-CRAN-MASS x86_64 7.3.61-1.fc40.copr7613806 copr_base 1.8 MiB R-CRAN-MatrixModels noarch 0.5.3-1.fc40.copr7356087 copr_base 520.9 KiB R-CRAN-R6 noarch 2.5.1-1.fc40.copr7349938 copr_base 115.9 KiB R-CRAN-RSpectra x86_64 0.16.2-1.fc40.copr7752181 copr_base 1.3 MiB R-CRAN-RcppAnnoy x86_64 0.0.22-1.fc40.copr8100011 copr_base 668.6 KiB R-CRAN-SparseM x86_64 1.84.2-1.fc40.copr7745418 copr_base 1.6 MiB R-CRAN-abind noarch 1.4.8-1.fc40.copr8016475 copr_base 96.0 KiB R-CRAN-askpass x86_64 1.2.0-1.fc40.copr7353610 copr_base 40.4 KiB R-CRAN-backports x86_64 1.5.0-1.fc40.copr7483453 copr_base 211.8 KiB R-CRAN-base64enc x86_64 0.1.3-3.fc40.copr7349951 copr_base 51.7 KiB R-CRAN-bit x86_64 4.5.0-1.fc40.copr8046195 copr_base 1.6 MiB R-CRAN-bit64 x86_64 4.5.2-1.fc40.copr8059694 copr_base 908.4 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crypto-policies-scripts noarch 20240725-1.git28d3e2d.fc40 updates 328.0 KiB cups-libs x86_64 1:2.4.10-7.fc40 updates 622.9 KiB dbus-libs x86_64 1:1.14.10-3.fc40 fedora 368.9 KiB default-fonts-core-sans noarch 4.0-13.fc40 updates 11.9 KiB desktop-file-utils x86_64 0.26-12.fc40 fedora 226.0 KiB emacs-filesystem noarch 1:29.4-9.fc40 updates 0.0 B expat x86_64 2.6.3-1.fc40 updates 287.5 KiB flexiblas x86_64 3.4.4-1.fc40 updates 48.5 KiB flexiblas-devel x86_64 3.4.4-1.fc40 updates 4.7 MiB flexiblas-netlib x86_64 3.4.4-1.fc40 updates 10.6 MiB flexiblas-netlib64 x86_64 3.4.4-1.fc40 updates 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-1.fc40 updates 39.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.4-1.fc40 updates 39.3 KiB fontconfig x86_64 2.15.0-6.fc40 updates 768.0 KiB fontconfig-devel x86_64 2.15.0-6.fc40 updates 117.2 KiB fonts-filesystem noarch 1:2.0.5-14.fc40 fedora 0.0 B freetype x86_64 2.13.2-5.fc40 fedora 842.6 KiB freetype-devel x86_64 2.13.2-5.fc40 fedora 7.8 MiB fribidi x86_64 1.0.14-2.fc40 updates 367.6 KiB gc x86_64 8.2.2-6.fc40 fedora 258.7 KiB gcc x86_64 14.2.1-3.fc40 updates 104.3 MiB gcc-c++ x86_64 14.2.1-3.fc40 updates 38.2 MiB gcc-gfortran x86_64 14.2.1-3.fc40 updates 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-3.fc40 updates 57.1 KiB gettext x86_64 0.22.5-4.fc40 updates 5.2 MiB gettext-envsubst x86_64 0.22.5-4.fc40 updates 74.9 KiB gettext-libs x86_64 0.22.5-4.fc40 updates 1.7 MiB gettext-runtime x86_64 0.22.5-4.fc40 updates 481.3 KiB glib2 x86_64 2.80.3-1.fc40 updates 14.6 MiB glib2-devel x86_64 2.80.3-1.fc40 updates 15.6 MiB glibc-devel x86_64 2.39-22.fc40 updates 35.8 KiB glibc-headers-x86 noarch 2.39-22.fc40 updates 2.2 MiB glpk x86_64 5.0-11.fc40 fedora 870.7 KiB gnutls x86_64 3.8.6-1.fc40 updates 3.2 MiB google-noto-fonts-common noarch 20240301-2.fc40 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240301-2.fc40 fedora 1.2 MiB graphite2 x86_64 1.3.14-15.fc40 fedora 192.0 KiB graphite2-devel x86_64 1.3.14-15.fc40 fedora 49.1 KiB guile30 x86_64 3.0.7-12.fc40 fedora 51.5 MiB harfbuzz x86_64 8.5.0-1.fc40 updates 2.7 MiB harfbuzz-devel x86_64 8.5.0-1.fc40 updates 5.1 MiB harfbuzz-icu x86_64 8.5.0-1.fc40 updates 15.5 KiB hdf5 x86_64 1.12.1-15.fc40 fedora 8.4 MiB java-21-openjdk x86_64 1:21.0.4.0.7-2.fc40 updates 1.1 MiB java-21-openjdk-devel x86_64 1:21.0.4.0.7-2.fc40 updates 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.4.0.7-2.fc40 updates 204.9 MiB javapackages-filesystem noarch 6.2.0-9.fc40 fedora 1.9 KiB jbigkit-libs x86_64 2.1-29.fc40 fedora 117.6 KiB kernel-headers x86_64 6.10.3-200.fc40 updates 6.3 MiB less x86_64 643-6.fc40 updates 372.6 KiB libICE x86_64 1.1.1-3.fc40 fedora 181.2 KiB libRmath x86_64 4.4.1-5.fc40 updates 246.8 KiB libRmath-devel x86_64 4.4.1-5.fc40 updates 17.4 KiB libSM x86_64 1.2.4-3.fc40 fedora 97.3 KiB libX11 x86_64 1.8.10-2.fc40 updates 1.3 MiB libX11-common noarch 1.8.10-2.fc40 updates 1.1 MiB libX11-devel x86_64 1.8.10-2.fc40 updates 1.0 MiB libX11-xcb x86_64 1.8.10-2.fc40 updates 15.0 KiB libXau x86_64 1.0.11-6.fc40 fedora 66.9 KiB libXau-devel x86_64 1.0.11-6.fc40 fedora 6.4 KiB libXcomposite x86_64 0.4.6-3.fc40 fedora 44.5 KiB libXext x86_64 1.3.6-1.fc40 fedora 90.1 KiB libXext-devel x86_64 1.3.6-1.fc40 fedora 98.9 KiB libXft x86_64 2.3.8-6.fc40 fedora 164.5 KiB libXft-devel x86_64 2.3.8-6.fc40 fedora 31.7 KiB libXi x86_64 1.8.2-1.fc40 updates 80.7 KiB libXmu x86_64 1.2.1-1.fc40 updates 187.5 KiB libXrender x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXt x86_64 1.3.0-3.fc40 fedora 425.9 KiB libXtst x86_64 1.2.5-1.fc40 updates 33.6 KiB libaec x86_64 1.1.2-1.fc40 fedora 94.1 KiB libb2 x86_64 0.98.1-11.fc40 fedora 42.2 KiB libblkid-devel x86_64 2.40.1-1.fc40 updates 44.9 KiB libdatrie x86_64 0.2.13-9.fc40 fedora 57.9 KiB libdeflate x86_64 1.21-2.fc40 updates 117.0 KiB libdeflate-devel x86_64 1.21-2.fc40 updates 25.7 KiB libffi-devel x86_64 3.4.4-7.fc40 fedora 33.3 KiB libfontenc x86_64 1.1.7-3.fc40 fedora 65.0 KiB libgfortran x86_64 14.2.1-3.fc40 updates 3.0 MiB libicu x86_64 74.2-1.fc40 fedora 34.9 MiB libicu-devel x86_64 74.2-1.fc40 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-1.fc40 fedora 776.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libmount-devel x86_64 2.40.1-1.fc40 updates 63.5 KiB libmpc x86_64 1.3.1-5.fc40 fedora 164.7 KiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libpng-devel x86_64 2:1.6.40-3.fc40 fedora 881.5 KiB libquadmath x86_64 14.2.1-3.fc40 updates 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc40 updates 21.9 KiB libselinux-devel x86_64 3.7-5.fc40 updates 126.4 KiB libsepol-devel x86_64 3.7-2.fc40 updates 120.3 KiB libstdc++-devel x86_64 14.2.1-3.fc40 updates 15.4 MiB libtextstyle x86_64 0.22.5-4.fc40 updates 195.6 KiB libthai x86_64 0.1.29-8.fc40 fedora 783.5 KiB libtiff x86_64 4.6.0-2.fc40 fedora 1.1 MiB libtirpc-devel x86_64 1.3.5-0.fc40 updates 251.6 KiB libwebp x86_64 1.3.2-5.fc40 fedora 793.6 KiB libxcb x86_64 1.17.0-1.fc40 updates 1.1 MiB libxcb-devel x86_64 1.17.0-1.fc40 updates 2.7 MiB libxcrypt-devel x86_64 4.4.36-5.fc40 fedora 30.3 KiB libxml2-devel x86_64 2.12.8-1.fc40 updates 3.4 MiB lksctp-tools x86_64 1.0.19-6.fc40 fedora 269.6 KiB lua x86_64 5.4.6-5.fc40 fedora 597.8 KiB lua-posix x86_64 36.2.1-6.fc40 fedora 599.7 KiB make x86_64 1:4.4.1-6.fc40 fedora 1.8 MiB mkfontscale x86_64 1.2.2-6.fc40 fedora 49.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB nspr x86_64 4.35.0-29.fc40 updates 316.4 KiB nss x86_64 3.104.0-1.fc40 updates 1.9 MiB nss-softokn x86_64 3.104.0-1.fc40 updates 1.9 MiB nss-softokn-freebl x86_64 3.104.0-1.fc40 updates 803.7 KiB nss-sysinit x86_64 3.104.0-1.fc40 updates 18.2 KiB nss-util x86_64 3.104.0-1.fc40 updates 230.2 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openblas-openmp64 x86_64 0.3.26-4.fc40 fedora 39.1 MiB pango x86_64 1.54.0-1.fc40 updates 996.2 KiB pcre2-devel x86_64 10.44-1.fc40 updates 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc40 updates 590.0 KiB pcre2-utf32 x86_64 10.44-1.fc40 updates 562.0 KiB pixman x86_64 0.43.4-1.fc40 updates 710.1 KiB pixman-devel x86_64 0.43.4-1.fc40 updates 49.4 KiB python-pip-wheel noarch 23.3.2-1.fc40 fedora 1.5 MiB python3 x86_64 3.12.6-1.fc40 updates 31.5 KiB python3-libs x86_64 3.12.6-1.fc40 updates 41.3 MiB python3-packaging noarch 23.2-4.fc40 fedora 421.1 KiB suitesparse x86_64 7.6.0-1.fc40 fedora 137.1 MiB sysprof-capture-devel x86_64 46.0-1.fc40 fedora 252.8 KiB tcl x86_64 1:8.6.13-2.fc40 fedora 4.2 MiB tcl-devel x86_64 1:8.6.13-2.fc40 fedora 809.0 KiB tk x86_64 1:8.6.13-3.fc40 fedora 3.6 MiB tk-devel x86_64 1:8.6.13-3.fc40 fedora 983.9 KiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 fedora 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 fedora 122.7 KiB tzdata noarch 2024a-5.fc40 updates 1.6 MiB tzdata-java noarch 2024a-5.fc40 updates 101.7 KiB xdg-utils noarch 1.2.1-1.fc40 fedora 346.3 KiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-2.fc40 updates 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc40 fedora 255.8 KiB zlib-ng-compat-devel x86_64 2.1.7-2.fc40 updates 106.8 KiB Transaction Summary: Installing: 301 packages Total size of inbound packages is 434 MiB. 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copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.f >>> Stop pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc40 [ 2/303] Prepare transaction 100% | 1.3 KiB/s | 301.0 B | 00m00s [ 3/303] Installing libgfortran-0:14.2 100% | 380.5 MiB/s | 3.0 MiB | 00m00s [ 4/303] Installing nspr-0:4.35.0-29.f 100% | 155.4 MiB/s | 318.2 KiB | 00m00s [ 5/303] Installing xorg-x11-proto-dev 100% | 254.7 MiB/s | 1.8 MiB | 00m00s [ 6/303] Installing libpng-2:1.6.40-3. 100% | 237.4 MiB/s | 243.1 KiB | 00m00s [ 7/303] Installing nss-util-0:3.104.0 100% | 225.7 MiB/s | 231.2 KiB | 00m00s [ 8/303] Installing libquadmath-0:14.2 100% | 159.7 MiB/s | 327.2 KiB | 00m00s [ 9/303] Installing libmpc-0:1.3.1-5.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 10/303] Installing libicu-0:74.2-1.fc 100% | 392.6 MiB/s | 34.9 MiB | 00m00s [ 11/303] Installing 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MiB/s | 199.3 KiB | 00m00s [210/303] Installing R-CRAN-irlba-0:2.3 100% | 176.8 MiB/s | 362.0 KiB | 00m00s [211/303] Installing R-CRAN-MatrixModel 100% | 131.0 MiB/s | 536.8 KiB | 00m00s [212/303] Installing R-CRAN-survival-0: 100% | 396.2 MiB/s | 8.7 MiB | 00m00s [213/303] Installing R-CRAN-cluster-0:2 100% | 167.6 MiB/s | 1.0 MiB | 00m00s [214/303] Installing R-CRAN-foreign-0:0 100% | 131.8 MiB/s | 539.7 KiB | 00m00s [215/303] Installing R-CRAN-rpart-0:4.1 100% | 191.7 MiB/s | 981.4 KiB | 00m00s [216/303] Installing R-CRAN-isoband-0:0 100% | 312.0 MiB/s | 1.9 MiB | 00m00s [217/303] Installing R-CRAN-polynom-0:1 100% | 91.6 MiB/s | 938.2 KiB | 00m00s [218/303] Installing R-CRAN-prettyunits 100% | 98.4 MiB/s | 201.4 KiB | 00m00s [219/303] Installing R-CRAN-commonmark- 100% | 158.1 MiB/s | 323.8 KiB | 00m00s [220/303] Installing R-CRAN-sourcetools 100% | 36.2 MiB/s | 148.4 KiB | 00m00s [221/303] Installing R-CRAN-xtable-0:1. 100% | 224.0 MiB/s | 917.5 KiB | 00m00s [222/303] Installing 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R-CRAN-minqa-0:1.2 100% | 118.4 MiB/s | 242.6 KiB | 00m00s [261/303] Installing R-CRAN-rappdirs-0: 100% | 46.2 MiB/s | 94.5 KiB | 00m00s [262/303] Installing R-CRAN-sass-0:0.4. 100% | 281.2 MiB/s | 4.2 MiB | 00m00s [263/303] Installing R-CRAN-bslib-0:0.8 100% | 237.0 MiB/s | 10.2 MiB | 00m00s [264/303] Installing R-CRAN-rmarkdown-0 100% | 275.7 MiB/s | 6.9 MiB | 00m00s [265/303] Installing R-CRAN-htmlwidgets 100% | 340.9 MiB/s | 2.0 MiB | 00m00s [266/303] Installing R-CRAN-htmlTable-0 100% | 212.6 MiB/s | 1.3 MiB | 00m00s [267/303] Installing R-CRAN-corrplot-0: 100% | 380.2 MiB/s | 4.9 MiB | 00m00s [268/303] Installing R-CRAN-abind-0:1.4 100% | 100.1 MiB/s | 102.5 KiB | 00m00s [269/303] Installing R-CRAN-carData-0:3 100% | 324.9 MiB/s | 2.3 MiB | 00m00s [270/303] Installing R-CRAN-nloptr-0:2. 100% | 208.7 MiB/s | 1.3 MiB | 00m00s [271/303] Installing R-CRAN-lme4-0:1.1. 100% | 346.5 MiB/s | 5.9 MiB | 00m00s [272/303] Installing R-CRAN-numDeriv-0: 100% | 77.5 MiB/s | 158.8 KiB | 00m00s 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100% | 141.2 MiB/s | 144.5 KiB | 00m00s [299/303] Installing R-CRAN-RANN-0:2.6. 100% | 49.3 MiB/s | 101.0 KiB | 00m00s [300/303] Installing R-CRAN-png-0:0.1.8 100% | 37.0 MiB/s | 75.7 KiB | 00m00s [301/303] Installing R-CRAN-scatterplot 100% | 181.4 MiB/s | 371.5 KiB | 00m00s [302/303] Installing gcc-plugin-annobin 100% | 4.1 MiB/s | 58.6 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch [303/303] Installing annobin-plugin-gcc 100% | 1.7 MiB/s | 977.9 KiB | 00m01s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Running post-transaction scriptlet: crypto-policies-scripts-0:20240725-1.git >>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20240725-1.git28d >>> Running post-transaction scriptlet: nss-0:3.104.0-1.fc40.x86_64 >>> Stop post-transaction scriptlet: nss-0:3.104.0-1.fc40.x86_64 >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2. >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc4 >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc40.x86_ >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc4 >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc40.x >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 Warning: skipped PGP checks for 135 package(s). Finish: build setup for R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm Start: rpmbuild R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.CA2oMx + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf iCellR + /usr/bin/mkdir -p iCellR + cd iCellR + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/iCellR_1.6.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/iCellR-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/iCellR-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d iCellR/src ']' + find iCellR/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d iCellR/src ']' + find 'iCellR/src/Make*' -type f -exec sed -i s@-g0@@g '{}' ';' find: ‘iCellR/src/Make*’: No such file or directory + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dftT4m + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd iCellR + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9VAYgr + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd iCellR + mkdir -p /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64/usr/local/lib/R/library iCellR * installing *source* package ‘iCellR’ ... ** package ‘iCellR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c jaccard_coeff.cpp -o jaccard_coeff.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o iCellR.so RcppExports.o jaccard_coeff.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64/usr/local/lib/R/library/00LOCK-iCellR/00new/iCellR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘iCellR’ finding HTML links ... done Rphenograph html add.10x.image html add.adt html add.vdj html adt.rna.merge html bubble.gg.plot html capture.image.10x html cc html cell.cycle html cell.filter html cell.gating html cell.type.pred html change.clust html clono.plot html clust.avg.exp html clust.cond.info html clust.ord html clust.rm html clust.stats.plot html cluster.plot html data.aggregation html data.scale html down.sample html find.dim.genes html findMarkers html find_neighbors html g2m.phase html gate.to.clust html gene.plot html gene.stats html gg.cor html heatmap.gg.plot html hto.anno html i.score html iba html iclust html load.h5 html load10x html make.bed html make.gene.model html make.obj html myImp html norm.adt html norm.data html opt.pcs.plot html prep.vdj html pseudotime html pseudotime.knetl html pseudotime.tree html qc.stats html run.anchor html run.cca html run.clustering html run.diff.exp html run.diffusion.map html run.impute html run.knetl html run.mnn html run.pc.tsne html run.pca html run.phenograph html run.tsne html run.umap html finding level-2 HTML links ... done s.phase html spatial.plot html stats.plot html top.markers html vdj.stats html volcano.ma.plot html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iCellR) + test -d iCellR/src + cd iCellR/src + rm -f RcppExports.o jaccard_coeff.o iCellR.so + rm -f /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.6.7-1.fc40.copr8100652 --unique-debug-suffix -1.6.7-1.fc40.copr8100652.x86_64 --unique-debug-src-base R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/iCellR find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 5 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 Provides: R-CRAN-iCellR = 1.6.7-1.fc40.copr8100652 R-CRAN-iCellR(x86-64) = 1.6.7-1.fc40.copr8100652 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-iCellR-debugsource-1.6.7-1.fc40.copr8100652.x86_64 Provides: R-CRAN-iCellR-debugsource = 1.6.7-1.fc40.copr8100652 R-CRAN-iCellR-debugsource(x86-64) = 1.6.7-1.fc40.copr8100652 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-iCellR-debuginfo-1.6.7-1.fc40.copr8100652.x86_64 Provides: R-CRAN-iCellR-debuginfo = 1.6.7-1.fc40.copr8100652 R-CRAN-iCellR-debuginfo(x86-64) = 1.6.7-1.fc40.copr8100652 debuginfo(build-id) = 8dc9f6fbfcada7c9ac2287cf06beab5924801bfd Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-iCellR-debugsource(x86-64) = 1.6.7-1.fc40.copr8100652 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-iCellR-debugsource-1.6.7-1.fc40.copr8100652.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-iCellR-debuginfo-1.6.7-1.fc40.copr8100652.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RLhP9S + umask 022 + cd /builddir/build/BUILD + cd iCellR + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Ow47lc + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/iCellR-SPECPARTS + rm -rf iCellR iCellR.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm Finish: build phase for R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1727859359.423951/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-iCellR-1.6.7-1.fc40.copr8100652.src.rpm) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-iCellR-debugsource", "epoch": null, "version": "1.6.7", "release": "1.fc40.copr8100652", "arch": "x86_64" }, { "name": "R-CRAN-iCellR", "epoch": null, "version": "1.6.7", "release": "1.fc40.copr8100652", "arch": "src" }, { "name": "R-CRAN-iCellR", "epoch": null, "version": "1.6.7", "release": "1.fc40.copr8100652", "arch": "x86_64" }, { "name": "R-CRAN-iCellR-debuginfo", "epoch": null, "version": "1.6.7", "release": "1.fc40.copr8100652", "arch": "x86_64" } ] } RPMResults finished