Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c198' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8103937-fedora-40-x86_64 --chroot fedora-40-x86_64 Version: 0.73 PID: 17644 Logging PID: 17645 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8103937, 'buildroot_pkgs': [], 'chroot': 'fedora-40-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '5645d3604f492530136bba39f393d5c8fce6d838', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-ridigbio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-ridigbio', 'package_version': '0.4.1-1.copr8103937', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-40-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8103937-fedora-40-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-ridigbio /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-ridigbio', '/var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio'... Running: git checkout 5645d3604f492530136bba39f393d5c8fce6d838 -- cmd: ['git', 'checkout', '5645d3604f492530136bba39f393d5c8fce6d838', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio rc: 0 stdout: stderr: Note: switching to '5645d3604f492530136bba39f393d5c8fce6d838'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5645d36 automatic import of R-CRAN-ridigbio Running: copr-distgit-client sources INFO: Calling: curl -H Pragma: -o ridigbio_0.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-ridigbio/ridigbio_0.4.1.tar.gz/md5/fc87a006965ccf249eae36c11a1370c3/ridigbio_0.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1820k 100 1820k 0 0 16.4M 0 --:--:-- --:--:-- --:--:-- 16.4M /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: md5sum ridigbio_0.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio/R-CRAN-ridigbio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727920600.733102 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio/R-CRAN-ridigbio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1727920600.733102 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio/R-CRAN-ridigbio.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1727920600.733102/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 908.9 KiB/s | 29.1 KiB | 00m00s fedora 100% | 901.6 KiB/s | 30.7 KiB | 00m00s Copr repository 100% | 40.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 48.6 MiB/s | 12.5 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.4-8.fc40 updates 5.8 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 40-39 updates 19.1 KiB findutils x86_64 1:4.9.0-9.fc40 updates 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39-22.fc40 updates 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 288-1.fc40 updates 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-3.fc40 updates 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40.1-1.fc40 updates 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc40 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.27-1.fc40 updates 66.3 KiB ansible-srpm-macros noarch 1-14.fc40 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc40 updates 327.4 KiB authselect x86_64 1.5.0-5.fc40 fedora 153.6 KiB authselect-libs x86_64 1.5.0-5.fc40 fedora 818.3 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.41-37.fc40 updates 26.4 MiB binutils-gold x86_64 2.41-37.fc40 updates 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc40 updates 2.4 MiB coreutils-common x86_64 9.4-8.fc40 updates 11.4 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20240725-1.git28d3e2d.fc40 updates 153.3 KiB curl x86_64 8.6.0-10.fc40 updates 738.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-14.fc40 fedora 199.0 KiB dwz x86_64 0.15-6.fc40 fedora 290.9 KiB ed x86_64 1.20.2-1.fc40 updates 146.9 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.191-4.fc40 fedora 2.5 MiB elfutils-debuginfod-client x86_64 0.191-4.fc40 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-4.fc40 fedora 1.8 KiB elfutils-libelf x86_64 0.191-4.fc40 fedora 1.2 MiB elfutils-libs x86_64 0.191-4.fc40 fedora 646.1 KiB fedora-gpg-keys noarch 40-2 updates 124.7 KiB fedora-release noarch 40-39 updates 0.0 B fedora-release-identity-basic noarch 40-39 updates 654.0 B fedora-repos noarch 40-2 updates 4.9 KiB file x86_64 5.45-4.fc40 fedora 103.5 KiB file-libs x86_64 5.45-4.fc40 fedora 9.9 MiB filesystem x86_64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.3.2-1.fc40 updates 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 15.1-1.fc40 updates 13.0 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9-1.fc40 fedora 716.0 B glibc x86_64 2.39-22.fc40 updates 6.6 MiB glibc-common x86_64 2.39-22.fc40 updates 1.0 MiB glibc-gconv-extra x86_64 2.39-22.fc40 updates 7.8 MiB gmp x86_64 1:6.2.1-8.fc40 fedora 794.6 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.5.0-1.fc40 fedora 60.6 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-23.fc40 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.3-1.fc40 updates 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-4.fc40 updates 914.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40.1-1.fc40 updates 258.5 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc40 updates 219.8 KiB libcap-ng x86_64 0.8.4-4.fc40 fedora 73.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.6.0-10.fc40 updates 776.8 KiB libeconf x86_64 0.6.2-2.fc40 updates 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40.1-1.fc40 updates 362.9 KiB libffi x86_64 3.4.4-7.fc40 fedora 81.6 KiB libgcc x86_64 14.2.1-3.fc40 updates 274.6 KiB libgomp x86_64 14.2.1-3.fc40 updates 523.6 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40.1-1.fc40 updates 351.8 KiB libnghttp2 x86_64 1.59.0-3.fc40 updates 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.1-2.fc40 updates 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.7-5.fc40 updates 177.0 KiB libsemanage x86_64 3.7-2.fc40 updates 293.5 KiB libsepol x86_64 3.7-2.fc40 updates 817.9 KiB libsmartcols x86_64 2.40.1-1.fc40 updates 180.4 KiB libssh x86_64 0.10.6-5.fc40 fedora 509.3 KiB libssh-config noarch 0.10.6-5.fc40 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc40 updates 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.5-0.fc40 updates 202.7 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc40 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40.1-1.fc40 updates 37.4 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-5.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.8-1.fc40 updates 1.7 MiB libzstd x86_64 1.5.6-1.fc40 updates 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-4.fc40 updates 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 fedora 104.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.2-3.fc40 updates 7.8 MiB p11-kit x86_64 0.25.5-1.fc40 updates 2.2 MiB p11-kit-trust x86_64 0.25.5-1.fc40 updates 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.1-3.fc40 updates 1.8 MiB pam-libs x86_64 1.6.1-3.fc40 updates 135.0 KiB pcre2 x86_64 10.44-1.fc40 updates 653.5 KiB pcre2-syntax noarch 10.44-1.fc40 updates 251.6 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.1-2.fc40 updates 82.9 KiB pkgconf-m4 noarch 2.1.1-2.fc40 updates 13.9 KiB pkgconf-pkg-config x86_64 2.1.1-2.fc40 updates 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.0-1.fc40 updates 1.9 KiB python-srpm-macros noarch 3.12-8.fc40 updates 50.6 KiB qt5-srpm-macros noarch 5.15.15-1.fc40 updates 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc40 updates 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.7.0-1.fc40 updates 2.4 MiB rust-srpm-macros noarch 26.3-1.fc40 updates 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 fedora 1.4 MiB systemd-libs x86_64 255.12-1.fc40 updates 1.9 MiB util-linux-core x86_64 2.40.1-1.fc40 updates 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 fedora 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc40 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc40 updates 134.0 KiB zstd x86_64 1.5.6-1.fc40 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 152 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). 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[151/154] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/154] Installing util-linux-0:2.40. 100% | 79.7 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.1-1.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.1-1.fc40.x86_64 [153/154] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [154/154] Installing info-0:7.1-2.fc40. 100% | 235.9 KiB/s | 358.2 KiB | 00m02s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0 >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.27-1.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0.2-1.fc40.x86_64 authselect-1.5.0-5.fc40.x86_64 authselect-libs-1.5.0-5.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-37.fc40.x86_64 binutils-gold-2.41-37.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc40.noarch coreutils-9.4-8.fc40.x86_64 coreutils-common-9.4-8.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240725-1.git28d3e2d.fc40.noarch curl-8.6.0-10.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.2-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-4.fc40.x86_64 elfutils-debuginfod-client-0.191-4.fc40.x86_64 elfutils-default-yama-scope-0.191-4.fc40.noarch elfutils-libelf-0.191-4.fc40.x86_64 elfutils-libs-0.191-4.fc40.x86_64 fedora-gpg-keys-40-2.noarch fedora-release-40-39.noarch fedora-release-common-40-39.noarch fedora-release-identity-basic-40-39.noarch fedora-repos-40-2.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-9.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.2-1.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-15.1-1.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9-1.fc40.noarch glibc-2.39-22.fc40.x86_64 glibc-common-2.39-22.fc40.x86_64 glibc-gconv-extra-2.39-22.fc40.x86_64 glibc-minimal-langpack-2.39-22.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch gpg-pubkey-a15b79cc-63d04c2c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-1.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-4.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.1-1.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-10.fc40.x86_64 libeconf-0.6.2-2.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40.1-1.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.2.1-3.fc40.x86_64 libgomp-14.2.1-3.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.1-1.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-2.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.7-5.fc40.x86_64 libsemanage-3.7-2.fc40.x86_64 libsepol-3.7-2.fc40.x86_64 libsmartcols-2.40.1-1.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.2.1-3.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.5-0.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40.1-1.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.8-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.2-3.fc40.x86_64 p11-kit-0.25.5-1.fc40.x86_64 p11-kit-trust-0.25.5-1.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-3.fc40.x86_64 pam-libs-1.6.1-3.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc40.x86_64 pcre2-syntax-10.44-1.fc40.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-2.fc40.x86_64 pkgconf-m4-2.1.1-2.fc40.noarch pkgconf-pkg-config-2.1.1-2.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.15.0-1.fc40.noarch python-srpm-macros-3.12-8.fc40.noarch qt5-srpm-macros-5.15.15-1.fc40.noarch qt6-srpm-macros-6.7.2-2.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-1.fc40.x86_64 rust-srpm-macros-26.3-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-3.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.12-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.1-1.fc40.x86_64 util-linux-core-2.40.1-1.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-x86_64-1727920600.733102/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1727920600.733102/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-cwehmlft/R-CRAN-ridigbio/R-CRAN-ridigbio.spec) Config(child) 0 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm) Config(fedora-40-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1727920600.733102/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm Start: build setup for R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Updating and loading repositories: updates 100% | 1.0 MiB/s | 29.1 KiB | 00m00s fedora 100% | 1.0 MiB/s | 30.7 KiB | 00m00s Copr repository 100% | 41.6 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 20.9 MiB/s | 12.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-cowplot noarch 1.1.3-1.fc40.copr7362489 copr_base 2.1 MiB R-CRAN-httr noarch 1.4.7-1.fc40.copr7357937 copr_base 752.3 KiB R-CRAN-jsonlite x86_64 1.8.9-1.fc40.copr8046217 copr_base 2.3 MiB R-CRAN-kableExtra noarch 1.4.0-1.fc40.copr7361241 copr_base 4.2 MiB R-CRAN-leaflet noarch 2.2.2-1.fc40.copr7362441 copr_base 4.3 MiB R-CRAN-plyr x86_64 1.8.9-1.fc40.copr7353597 copr_base 1.1 MiB R-CRAN-tidyverse noarch 2.0.0-1.fc40.copr7368818 copr_base 620.5 KiB R-core x86_64 4.4.1-5.fc40 updates 101.6 MiB R-devel x86_64 4.4.1-5.fc40 updates 0.0 B Installing dependencies: R-CRAN-DBI noarch 1.2.3-1.fc40.copr7522874 copr_base 1.9 MiB R-CRAN-MASS x86_64 7.3.61-1.fc40.copr7613806 copr_base 1.8 MiB R-CRAN-Matrix x86_64 1.7.0-1.fc40.copr7382390 copr_base 8.0 MiB R-CRAN-R6 noarch 2.5.1-1.fc40.copr7349938 copr_base 115.9 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc40.copr7349948 copr_base 63.6 KiB R-CRAN-Rcpp x86_64 1.0.13-1.fc40.copr7745410 copr_base 8.4 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x86_64 3.0.2-1.fc40 fedora 776.9 KiB libkml x86_64 1.3.0-47.fc40 fedora 1.2 MiB libksba x86_64 1.6.6-1.fc40 fedora 392.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libmount-devel x86_64 2.40.1-1.fc40 updates 63.5 KiB libmpc x86_64 1.3.1-5.fc40 fedora 164.7 KiB liborc1 x86_64 1.9.4-1.fc40 updates 1.6 MiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libpng-devel x86_64 2:1.6.40-3.fc40 fedora 881.5 KiB libpq x86_64 16.4-1.fc40 updates 965.4 KiB libqhull_r x86_64 1:8.0.2-4.fc40 fedora 475.4 KiB libquadmath x86_64 14.2.1-3.fc40 updates 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc40 updates 21.9 KiB librttopo x86_64 1.1.0-14.fc40 fedora 504.8 KiB libselinux-devel x86_64 3.7-5.fc40 updates 126.4 KiB libsepol-devel x86_64 3.7-2.fc40 updates 120.3 KiB libspatialite x86_64 5.1.0-5.fc40 fedora 15.2 MiB libstdc++-devel x86_64 14.2.1-3.fc40 updates 15.4 MiB libtextstyle x86_64 0.22.5-4.fc40 updates 195.6 KiB libthai x86_64 0.1.29-8.fc40 fedora 783.5 KiB libtiff x86_64 4.6.0-2.fc40 fedora 1.1 MiB libtirpc-devel x86_64 1.3.5-0.fc40 updates 251.6 KiB libwebp x86_64 1.3.2-5.fc40 fedora 793.6 KiB libxcb x86_64 1.17.0-1.fc40 updates 1.1 MiB libxcb-devel x86_64 1.17.0-1.fc40 updates 2.7 MiB libxcrypt-devel x86_64 4.4.36-5.fc40 fedora 30.3 KiB libxml2-devel x86_64 2.12.8-1.fc40 updates 3.4 MiB lksctp-tools x86_64 1.0.19-6.fc40 fedora 269.6 KiB lua x86_64 5.4.6-5.fc40 fedora 597.8 KiB lua-posix x86_64 36.2.1-6.fc40 fedora 599.7 KiB make x86_64 1:4.4.1-6.fc40 fedora 1.8 MiB mariadb-connector-c x86_64 3.3.8-3.fc40 fedora 513.4 KiB mariadb-connector-c-config noarch 3.3.8-3.fc40 fedora 497.0 B metis x86_64 5.1.0.3-5.fc40 fedora 973.2 KiB minizip-ng-compat x86_64 3.0.10-7.fc40 fedora 158.5 KiB mkfontscale x86_64 1.2.2-6.fc40 fedora 49.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB ncurses x86_64 6.4-12.20240127.fc40 fedora 621.0 KiB netcdf x86_64 4.9.2-5.fc40 fedora 2.4 MiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB npth x86_64 1.7-1.fc40 fedora 49.6 KiB nspr x86_64 4.35.0-29.fc40 updates 316.4 KiB nss x86_64 3.104.0-1.fc40 updates 1.9 MiB nss-softokn x86_64 3.104.0-1.fc40 updates 1.9 MiB nss-softokn-freebl x86_64 3.104.0-1.fc40 updates 803.7 KiB nss-sysinit x86_64 3.104.0-1.fc40 updates 18.2 KiB nss-util x86_64 3.104.0-1.fc40 updates 230.2 KiB ogdi x86_64 4.1.1-1.fc40 fedora 797.2 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openblas-openmp64 x86_64 0.3.26-4.fc40 fedora 39.1 MiB openexr-libs x86_64 3.1.13-1.fc40 updates 6.4 MiB openjpeg2 x86_64 2.5.2-1.fc40 fedora 441.7 KiB pango x86_64 1.54.0-1.fc40 updates 996.2 KiB parquet-libs x86_64 15.0.2-5.fc40 updates 3.2 MiB pcre2-devel x86_64 10.44-1.fc40 updates 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc40 updates 590.0 KiB pcre2-utf32 x86_64 10.44-1.fc40 updates 562.0 KiB perl-AutoLoader noarch 5.74-506.fc40 fedora 20.5 KiB perl-B x86_64 1.88-506.fc40 fedora 492.4 KiB perl-Carp noarch 1.54-502.fc40 fedora 46.5 KiB perl-Class-Struct noarch 0.68-506.fc40 fedora 25.4 KiB perl-Data-Dumper x86_64 2.188-503.fc40 fedora 111.7 KiB perl-Digest noarch 1.20-502.fc40 fedora 35.2 KiB perl-Digest-MD5 x86_64 2.59-3.fc40 fedora 59.7 KiB perl-DynaLoader x86_64 1.54-506.fc40 fedora 32.1 KiB perl-Encode x86_64 4:3.21-505.fc40 fedora 4.7 MiB perl-Errno x86_64 1.37-506.fc40 fedora 8.3 KiB perl-Exporter noarch 5.78-3.fc40 fedora 54.2 KiB perl-Fcntl x86_64 1.15-506.fc40 fedora 24.6 KiB perl-File-Basename noarch 2.86-506.fc40 fedora 14.0 KiB perl-File-Path noarch 2.18-503.fc40 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-503.fc40 fedora 162.3 KiB perl-File-stat noarch 1.13-506.fc40 fedora 12.7 KiB perl-FileHandle noarch 2.05-506.fc40 fedora 9.3 KiB perl-Getopt-Long noarch 1:2.57-4.fc40 updates 144.1 KiB perl-Getopt-Std noarch 1.13-506.fc40 fedora 11.1 KiB perl-HTTP-Tiny noarch 0.088-5.fc40 fedora 152.1 KiB perl-IO x86_64 1.52-506.fc40 fedora 151.0 KiB perl-IO-Socket-IP noarch 0.42-2.fc40 fedora 98.6 KiB perl-IO-Socket-SSL noarch 2.085-1.fc40 fedora 685.0 KiB perl-IPC-Open3 noarch 1.22-506.fc40 fedora 22.4 KiB perl-MIME-Base64 x86_64 3.16-503.fc40 fedora 46.1 KiB perl-Mozilla-CA noarch 20231213-3.fc40 fedora 9.1 KiB perl-Net-SSLeay x86_64 1.94-3.fc40 fedora 1.3 MiB perl-POSIX x86_64 2.13-506.fc40 fedora 229.0 KiB perl-PathTools x86_64 3.89-502.fc40 fedora 179.6 KiB perl-Pod-Escapes noarch 1:1.07-503.fc40 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-503.fc40 fedora 163.1 KiB perl-Pod-Simple noarch 1:3.45-6.fc40 fedora 559.8 KiB perl-Pod-Usage noarch 4:2.03-504.fc40 updates 84.7 KiB perl-Scalar-List-Utils x86_64 5:1.63-503.fc40 fedora 145.5 KiB perl-SelectSaver noarch 1.02-506.fc40 fedora 2.2 KiB perl-Socket x86_64 4:2.038-1.fc40 updates 124.0 KiB perl-Storable x86_64 1:3.32-502.fc40 fedora 232.3 KiB perl-Symbol noarch 1.09-506.fc40 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-504.fc40 fedora 97.5 KiB perl-Term-Cap noarch 1.18-503.fc40 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-502.fc40 fedora 13.5 KiB perl-Text-Tabs+Wrap noarch 2024.001-1.fc40 fedora 22.5 KiB perl-Time-Local noarch 2:1.350-5.fc40 fedora 68.9 KiB perl-URI noarch 5.28-1.fc40 updates 240.2 KiB perl-base noarch 2.27-506.fc40 fedora 12.5 KiB perl-constant noarch 1.33-503.fc40 fedora 26.2 KiB perl-if noarch 0.61.000-506.fc40 fedora 5.8 KiB perl-interpreter x86_64 4:5.38.2-506.fc40 fedora 119.8 KiB perl-libnet noarch 3.15-503.fc40 fedora 289.0 KiB perl-libs x86_64 4:5.38.2-506.fc40 fedora 9.8 MiB perl-locale noarch 1.10-506.fc40 fedora 6.2 KiB perl-mro x86_64 1.28-506.fc40 fedora 41.6 KiB perl-overload noarch 1.37-506.fc40 fedora 71.5 KiB perl-overloading noarch 0.02-506.fc40 fedora 4.8 KiB perl-parent noarch 1:0.241-502.fc40 fedora 9.7 KiB perl-podlators noarch 1:5.01-502.fc40 fedora 308.1 KiB perl-vars noarch 1.05-506.fc40 fedora 3.9 KiB pixman x86_64 0.43.4-1.fc40 updates 710.1 KiB pixman-devel x86_64 0.43.4-1.fc40 updates 49.4 KiB poppler x86_64 24.02.0-2.fc40 fedora 3.5 MiB poppler-data noarch 0.4.11-7.fc40 fedora 12.3 MiB proj x86_64 9.3.1-4.fc40 updates 4.3 MiB proj-data noarch 9.3.1-4.fc40 updates 8.5 MiB protobuf x86_64 3.19.6-8.fc40 fedora 3.3 MiB python-pip-wheel noarch 23.3.2-1.fc40 fedora 1.5 MiB python3 x86_64 3.12.6-1.fc40 updates 31.5 KiB python3-libs x86_64 3.12.6-1.fc40 updates 41.3 MiB python3-packaging noarch 23.2-4.fc40 fedora 421.1 KiB re2 x86_64 1:20220601-19.fc40 updates 496.9 KiB snappy x86_64 1.1.10-4.fc40 fedora 67.0 KiB sysprof-capture-devel x86_64 46.0-1.fc40 fedora 252.8 KiB tcl x86_64 1:8.6.13-2.fc40 fedora 4.2 MiB tcl-devel x86_64 1:8.6.13-2.fc40 fedora 809.0 KiB thrift x86_64 0.15.0-4.fc40 fedora 4.6 MiB tk x86_64 1:8.6.13-3.fc40 fedora 3.6 MiB tk-devel x86_64 1:8.6.13-3.fc40 fedora 983.9 KiB tpm2-tss x86_64 4.1.3-1.fc40 updates 1.5 MiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 fedora 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 fedora 122.7 KiB tzdata noarch 2024a-5.fc40 updates 1.6 MiB tzdata-java noarch 2024a-5.fc40 updates 101.7 KiB unixODBC x86_64 2.3.12-4.fc40 fedora 1.2 MiB uriparser x86_64 0.9.8-1.fc40 updates 141.9 KiB utf8proc x86_64 2.7.0-7.fc40 fedora 362.4 KiB xclip x86_64 0.13-21.git11cba61.fc40 fedora 62.4 KiB xdg-utils noarch 1.2.1-1.fc40 fedora 346.3 KiB xerces-c x86_64 3.2.5-2.fc40 fedora 3.6 MiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-2.fc40 updates 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc40 fedora 255.8 KiB zlib-ng-compat-devel x86_64 2.1.7-2.fc40 updates 106.8 KiB Transaction Summary: Installing: 395 packages Total size of inbound packages is 423 MiB. 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perl-Fcntl-0:1.15-506.fc40.x8 100% | 162.2 KiB/s | 20.6 KiB | 00m00s [337/395] perl-overloading-0:0.02-506.f 100% | 106.8 KiB/s | 13.3 KiB | 00m00s [338/395] perl-mro-0:1.28-506.fc40.x86_ 100% | 182.1 KiB/s | 29.3 KiB | 00m00s [339/395] perl-SelectSaver-0:1.02-506.f 100% | 138.2 KiB/s | 12.2 KiB | 00m00s [340/395] perl-File-stat-0:1.13-506.fc4 100% | 134.4 KiB/s | 17.6 KiB | 00m00s [341/395] perl-Symbol-0:1.09-506.fc40.n 100% | 155.8 KiB/s | 14.6 KiB | 00m00s [342/395] perl-Socket-4:2.038-1.fc40.x8 100% | 2.1 MiB/s | 54.8 KiB | 00m00s [343/395] perl-Getopt-Long-1:2.57-4.fc4 100% | 2.4 MiB/s | 63.4 KiB | 00m00s [344/395] perl-Class-Struct-0:0.68-506. 100% | 109.3 KiB/s | 22.5 KiB | 00m00s [345/395] perl-Text-ParseWords-0:3.31-5 100% | 166.2 KiB/s | 16.3 KiB | 00m00s [346/395] blosc-0:1.21.6-1.fc40.x86_64 100% | 1.4 MiB/s | 59.0 KiB | 00m00s [347/395] perl-base-0:2.27-506.fc40.noa 100% | 129.1 KiB/s | 16.6 KiB | 00m00s [348/395] libgpg-error-0:1.49-1.fc40.x8 100% | 7.6 MiB/s | 232.4 KiB | 00m00s [349/395] snappy-0:1.1.10-4.fc40.x86_64 100% | 364.8 KiB/s | 37.2 KiB | 00m00s [350/395] uriparser-0:0.9.8-1.fc40.x86_ 100% | 2.1 MiB/s | 57.0 KiB | 00m00s [351/395] tpm2-tss-0:4.1.3-1.fc40.x86_6 100% | 13.4 MiB/s | 411.9 KiB | 00m00s [352/395] imath-0:3.1.12-1.fc40.x86_64 100% | 3.6 MiB/s | 98.5 KiB | 00m00s [353/395] libarrow-doc-0:15.0.2-5.fc40. 100% | 296.2 KiB/s | 28.4 KiB | 00m00s [354/395] libarrow-0:15.0.2-5.fc40.x86_ 100% | 28.2 MiB/s | 5.3 MiB | 00m00s [355/395] parquet-libs-0:15.0.2-5.fc40. 100% | 8.4 MiB/s | 987.3 KiB | 00m00s [356/395] utf8proc-0:2.7.0-7.fc40.x86_6 100% | 244.5 KiB/s | 80.2 KiB | 00m00s [357/395] libpq-0:16.4-1.fc40.x86_64 100% | 4.1 MiB/s | 248.6 KiB | 00m00s [358/395] perl-Encode-4:3.21-505.fc40.x 100% | 536.8 KiB/s | 1.1 MiB | 00m02s [359/395] openexr-libs-0:3.1.13-1.fc40. 100% | 7.0 MiB/s | 1.1 MiB | 00m00s [360/395] boost-program-options-0:1.83. 100% | 1.0 MiB/s | 108.4 KiB | 00m00s [361/395] liborc1-0:1.9.4-1.fc40.x86_64 100% | 6.2 MiB/s | 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>>> Stop pre-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.f >>> Stop pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc40 [ 2/397] Prepare transaction 100% | 783.0 B/s | 395.0 B | 00m01s [ 3/397] Installing libpng-2:1.6.40-3. 100% | 79.1 MiB/s | 243.1 KiB | 00m00s [ 4/397] Installing libgfortran-0:14.2 100% | 217.4 MiB/s | 3.0 MiB | 00m00s [ 5/397] Installing nspr-0:4.35.0-29.f 100% | 77.7 MiB/s | 318.2 KiB | 00m00s [ 6/397] Installing libjpeg-turbo-0:3. 100% | 152.1 MiB/s | 778.6 KiB | 00m00s [ 7/397] Installing xorg-x11-proto-dev 100% | 93.8 MiB/s | 1.8 MiB | 00m00s [ 8/397] Installing libgpg-error-0:1.4 100% | 95.6 MiB/s | 881.1 KiB | 00m00s [ 9/397] Installing expat-0:2.6.3-1.fc 100% | 94.3 MiB/s | 289.6 KiB | 00m00s [ 10/397] Installing nss-util-0:3.104.0 100% | 112.9 MiB/s | 231.2 KiB | 00m00s [ 11/397] Installing libquadmath-0:14.2 100% | 106.5 MiB/s | 327.2 KiB | 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fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc40.x86_ >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc4 >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc40.x >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 Warning: skipped PGP checks for 117 package(s). Finish: build setup for R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm Start: rpmbuild R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.I9H9Yi + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ridigbio + /usr/bin/mkdir -p ridigbio + cd ridigbio + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ridigbio_0.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/ridigbio-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/ridigbio-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d ridigbio/src ']' + true + '[' -d ridigbio/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.kA2vHH + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ridigbio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yPJXDa + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ridigbio + mkdir -p /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64/usr/local/lib/R/library ridigbio * installing *source* package ‘ridigbio’ ... file ‘R/ridigbio.R’ has the wrong MD5 checksum ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ridigbio’ finding HTML links ... done build_field_lists html dot-onAttach html idig_GET html idig_POST html idig_build_attrib html idig_check html idig_check_error html idig_count_media html idig_count_records html idig_meta_fields html idig_parse html idig_search html idig_search_media html idig_search_records html idig_top_media html idig_top_records html idig_url html idig_validate html idig_version html idig_view_media html idig_view_records html ignore_unused_imports html ridigbio-package html ridigbio html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ridigbio) + test -d ridigbio/src + rm -f /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.4.1-1.fc40.copr8103937 --unique-debug-suffix -0.4.1-1.fc40.copr8103937.x86_64 --unique-debug-src-base R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ridigbio find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.noarch Provides: R-CRAN-ridigbio = 0.4.1-1.fc40.copr8103937 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.NG6vVd + umask 022 + cd /builddir/build/BUILD + cd ridigbio + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.BE3qBa + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/ridigbio-SPECPARTS + rm -rf ridigbio ridigbio.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm Finish: build phase for R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1727920600.733102/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-ridigbio-0.4.1-1.fc40.copr8103937.src.rpm) Config(child) 0 minutes 45 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-ridigbio", "epoch": null, "version": "0.4.1", "release": "1.fc40.copr8103937", "arch": "noarch" }, { "name": "R-CRAN-ridigbio", "epoch": null, "version": "0.4.1", "release": "1.fc40.copr8103937", "arch": "src" } ] } RPMResults finished