silhouette.profile {SOMMD} | R Documentation |
Silhouette profile
Description
Function to compute the silhouette profile for the Nclus cluster of the SOM neurons
Usage
silhouette.profile(
SOM,
Nclus,
dist_clust = "euclidean",
clust_method = "complete"
)
Arguments
SOM |
the SOM object to cluster |
Nclus |
the cluster number on which the silhouette profile will be computed |
dist_clust |
the metric for the distance calculation |
clust_method |
the method for the clustering (passed to the hclust function |
Value
A vector of silhouette profile computed with the cluster package
Author(s)
Stefano Motta stefano.motta@unimib.it
Examples
#Read example SOM data
som_model <- readRDS(system.file("extdata", "SOM_HIFa.rds", package = "SOMMD"))
#Compute the silhouette profile
sil_pro <- silhouette.profile(som_model, Nclus=5, clust_method="complete")
[Package SOMMD version 0.1.2 Index]