boot.nonparTrans | Nonparametric bootstrap approach for a Semiparametric transformation model under dependent censpring |
Bvprob | Compute bivariate survival probability |
chol2par | Transform Cholesky decomposition to covariance matrix |
chol2par.elem | Transform Cholesky decomposition to covariance matrix parameter element. |
cr.lik | Competing risk likelihood function. |
dat.sim.reg.comp.risks | Data generation function for competing risks data |
dchol2par | Derivative of transform Cholesky decomposition to covariance matrix. |
dchol2par.elem | Derivative of transform Cholesky decomposition to covariance matrix element. |
Distance | Distance between vectors |
DYJtrans | Derivative of the Yeo-Johnson transformation function |
estimate.cf | Estimate the control function |
estimate.cmprsk | Estimate the competing risks model of Rutten, Willems et al. (20XX). |
IYJtrans | Inverse Yeo-Johnson transformation function |
LikF.cmprsk | Second step log-likelihood function. |
likF.cmprsk.Cholesky | Wrapper implementing likelihood function using Cholesky factorization. |
LikGamma1 | First step log-likelihood function for Z continuous |
LikGamma2 | First step log-likelihood function for Z binary. |
LikI.bis | Second likelihood function needed to fit the independence model in the second step of the estimation procedure. |
LikI.cmprsk | Second step log-likelihood function under independence assumption. |
LikI.cmprsk.Cholesky | Wrapper implementing likelihood function assuming independence between competing risks and censoring using Cholesky factorization. |
likIFG.cmprsk.Cholesky | Full likelihood (including estimation of control function). |
loglike.clayton.unconstrained | Log-likelihood function for the Clayton copula. |
loglike.frank.unconstrained | Log-likelihood function for the Frank copula. |
loglike.gaussian.unconstrained | Log-likelihood function for the Gaussian copula. |
loglike.gumbel.unconstrained | Log-likelihood function for the Gumbel copula. |
loglike.indep.unconstrained | Log-likelihood function for the independence copula. |
log_transform | Logarithmic transformation function. |
Longfun | Change H to long format |
NonParTrans | Fit a semiparametric transformation model for dependent censoring |
optimlikelihood | Fit the dependent censoring models. |
ParamCop | Estimation of a parametric dependent censoring model without covariates. |
power_transform | Power transformation function. |
ScoreEqn | Score equations of finite parameters |
SearchIndicate | Search function |
SolveH | Estimate a nonparametric transformation function |
SolveHt1 | Estimating equation for Ht1 |
SolveScore | Estimate finite parameters based on score equations |
TCsim | Function to simulate (Y,Delta) from the copula based model for (T,C). |
uniformize.data | Standardize data format |
variance.cmprsk | Compute the variance of the estimates. |
YJtrans | Yeo-Johnson transformation function |