%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mxfda
%global packver   0.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          A Functional Data Analysis Package for Spatial Single Cell Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-refund >= 0.1.35
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-spatstat.geom 
BuildRequires:    R-CRAN-spatstat.explore 
BuildRequires:    R-CRAN-SpatEntropy 
BuildRequires:    R-CRAN-SimDesign 
Requires:         R-CRAN-refund >= 0.1.35
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-lifecycle 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-spatstat.geom 
Requires:         R-CRAN-spatstat.explore 
Requires:         R-CRAN-SpatEntropy 
Requires:         R-CRAN-SimDesign 

%description
Methods and tools for deriving spatial summary functions from single-cell
imaging data and performing functional data analyses. Functions can be
applied to other single-cell technologies such as spatial transcriptomics.
Functional regression and functional principal component analysis methods
are in the 'refund' package <https://cran.r-project.org/package=refund>
while calculation of the spatial summary functions are from the 'spatstat'
package <https://spatstat.org/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}