gobyData {eDNAjoint} | R Documentation |
gobyData
Description
gobyData
Usage
gobyData
Format
A list with four matrices representing eDNA sampling data (qPCR.N and qPCR.K), seine sampling data (count), and site-level covariate data (site.cov).
- qPCR.N
Total number of eDNA qPCR replicates at each site (row) and eDNA sample replicate (column). Data includes 39 total sites and a maximum of 22 eDNA sample replicates. NA indicates that fewer eDNA samples were collected than the maximum at a site.
- qPCR.K
Total number of positive eDNA qPCR detections at each site (row) and eDNA sample replicate (column). Data includes 39 total sites and a maximum of 22 eDNA sample replicates. NA indicates that fewer eDNA samples were collected than the maximum at a site.
- count
Count of goby individuals in seine samples at each site (row) and seine sample replicate (column). Data includes 39 total sites and a maximum of 22 seine replicates. NA indicates that fewer seine samples were collected than the maximum at a site.
- site.cov
Data representing site-level covariates at each site (row). Data includes mean salinity at a site ('Salinity'), mean time to filter eDNA samples ('Filter_time'), density of other fish species ('Other_fishes'), size of habitat ('Hab_size'), and presence of vegetation ('Veg'). All non-integer covariate data is standardized.
Source
https://datadryad.org/stash/dataset/doi:10.5061/dryad.6rs23
References
Schmelzle, M.C. and Kinziger, A.P. (2016). Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species. Molecular Ecology Resources. 16(4): 895-908.