benchmarkRuntime | Benchmark runtimes of several functions |
createData | Simulate test data |
createDHARMa | Create a DHARMa object from hand-coded simulations or Bayesian posterior predictive simulations. |
getFamily | Get model family |
getFamily.default | Get model family |
getFamily.phyloglm | Get model family |
getFamily.phylolm | Get model family |
getFitted | Get fitted/predicted values |
getFitted.default | Get fitted/predicted values |
getFitted.gam | Get fitted/predicted values |
getFitted.HLfit | Get fitted/predicted values |
getFitted.MixMod | Get fitted/predicted values |
getFitted.phyloglm | Get fitted/predicted values |
getFitted.phylolm | Get fitted/predicted values |
getFixedEffects | Extract fixed effects of a supported model |
getFixedEffects.default | Extract fixed effects of a supported model |
getFixedEffects.MixMod | Extract fixed effects of a supported model |
getObservedResponse | Get model response |
getObservedResponse.default | Get model response |
getObservedResponse.HLfit | Get model response |
getObservedResponse.phyloglm | Get model response |
getObservedResponse.phylolm | Get model response |
getPearsonResiduals | Get Pearson residuals |
getPearsonResiduals.default | Get Pearson residuals |
getPearsonResiduals.gam | Get Pearson residuals |
getQuantile | Calculate Residual Quantiles |
getRandomState | Record and restore a random state |
getRefit | Get model refit |
getRefit.default | Get model refit |
getRefit.glmmTMB | Get model refit |
getRefit.HLfit | Get model refit |
getRefit.lm | Get model refit |
getRefit.MixMod | Get model refit |
getRefit.phyloglm | Get model refit |
getRefit.phylolm | Get model refit |
getResiduals | Get model residuals |
getResiduals.default | Get model residuals |
getResiduals.MixMod | Get model residuals |
getSimulations | Get model simulations |
getSimulations.default | Get model simulations |
getSimulations.gam | Get model simulations |
getSimulations.glmmTMB | Get model simulations |
getSimulations.HLfit | Get model simulations |
getSimulations.lmerMod | Get model simulations |
getSimulations.MixMod | Get model simulations |
getSimulations.negbin | Get model simulations |
getSimulations.phyloglm | Get model simulations |
getSimulations.phylolm | Get model simulations |
hist.DHARMa | Histogram of DHARMa residuals |
hurricanes | Hurricanes |
outliers | Return outliers |
plot.DHARMa | DHARMa standard residual plots |
plot.DHARMaBenchmark | Plots DHARMa benchmarks |
plotConventionalResiduals | Conventional residual plot |
plotQQunif | Quantile-quantile plot for a uniform distribution |
plotResiduals | Generic res ~ pred scatter plot with spline or quantile regression on top |
plotSimulatedResiduals | DHARMa standard residual plots |
print.DHARMa | Print simulated residuals |
recalculateResiduals | Recalculate residuals with grouping |
residuals.DHARMa | Return residuals of a DHARMa simulation |
runBenchmarks | Benchmark calculations |
simulateLRT | Simulated likelihood ratio tests for (generalized) linear mixed models |
simulateResiduals | Create simulated residuals |
testCategorical | Test for categorical dependencies |
testDispersion | DHARMa dispersion tests |
testGeneric | Test for a generic summary statistic based on simulated data |
testOutliers | Test for outliers |
testOverdispersion | Simulated overdisperstion tests |
testOverdispersionParametric | Parametric overdisperstion tests |
testPDistribution | Plot distribution of p-values. |
testPhylogeneticAutocorrelation | Test for phylogenetic autocorrelation |
testQuantiles | Test for quantiles |
testResiduals | DHARMa general residual test |
testSimulatedResiduals | Residual tests |
testSpatialAutocorrelation | Test for distance-based spatial (or similar type) autocorrelation |
testTemporalAutocorrelation | Test for temporal autocorrelation |
testUniformity | Test for overall uniformity |
testZeroInflation | Tests for zero-inflation |
transformQuantiles | Transform quantiles to pdf (deprecated) |