cnetplot {ggtangle} | R Documentation |
category-item network plot
Description
category-item network plot
Usage
cnetplot(
x,
layout = igraph::layout_nicely,
showCategory = 5,
color_category = "#E5C494",
size_category = 1,
color_item = "#B3B3B3",
size_item = 1,
color_edge = "grey",
size_edge = 0.5,
node_label = "all",
foldChange = NULL,
hilight = "none",
hilight_alpha = 0.3,
...
)
## S3 method for class 'list'
cnetplot(
x,
layout = igraph::layout_nicely,
showCategory = 5,
color_category = "#E5C494",
size_category = 1,
color_item = "#B3B3B3",
size_item = 1,
color_edge = "grey",
size_edge = 0.5,
node_label = "all",
foldChange = NULL,
hilight = "none",
hilight_alpha = 0.3,
...
)
Arguments
x |
input object |
layout |
network layout |
showCategory |
selected category to be displayed |
color_category |
color of category node |
size_category |
relative size of the category |
color_item |
color of item node |
size_item |
relative size of the item (e.g., genes) |
color_edge |
color of edge |
size_edge |
relative size of edge |
node_label |
one of 'all', 'none', 'category' and 'item' |
foldChange |
numeric values to color the item (e.g, foldChange of gene expression values) |
hilight |
selected category to be highlighted |
hilight_alpha |
transparent value for not selected to be highlight |
... |
additional parameters |
[Package ggtangle version 0.0.3 Index]