PairSharedQuartetStatus {Quartet} | R Documentation |
Status of quartets that exist in two trees
Description
Removes all tips that do not occur in both tree1
and tree2
, then calculates
the status of the remaining quartets.
Usage
PairSharedQuartetStatus(tree1, tree2)
Arguments
tree1 , tree2 |
Trees of class |
Value
Returns a named array of six integers corresponding to the quantities of Estabrook et al. (1985):
- N
The total number of quartet statements for two trees of n leaves, i.e. 2 Q.
- Q
The total number of quartets for n leaves.
- s
The number of quartets that are resolved identically in both trees.
- d
The number of quartets that are resolved differently in each tree.
- r1
The number of quartets that are resolved in tree 1, but not in tree 2.
- r2
The number of quartets that are resolved in tree 2, but not in tree 1.
- u
The number of quartets that are unresolved in both trees.
Author(s)
Martin R. Smith (martin.smith@durham.ac.uk)
See Also
Other element-by-element comparisons:
CompareQuartets()
,
CompareQuartetsMulti()
,
CompareSplits()
,
QuartetState()
,
SharedQuartetStatus()
,
SplitStatus()