%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  envi
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Environmental Interpolation using Spatial Kernel Density Estimation

License:          Apache License (>= 2.0)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-concaveman 
BuildRequires:    R-CRAN-cvAUC 
BuildRequires:    R-CRAN-doFuture 
BuildRequires:    R-CRAN-doRNG 
BuildRequires:    R-CRAN-fields 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-future 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-iterators 
BuildRequires:    R-CRAN-pls 
BuildRequires:    R-CRAN-ROCR 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-sparr 
BuildRequires:    R-CRAN-spatstat.geom 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-terra 
Requires:         R-CRAN-concaveman 
Requires:         R-CRAN-cvAUC 
Requires:         R-CRAN-doFuture 
Requires:         R-CRAN-doRNG 
Requires:         R-CRAN-fields 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-future 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-CRAN-iterators 
Requires:         R-CRAN-pls 
Requires:         R-CRAN-ROCR 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-sparr 
Requires:         R-CRAN-spatstat.geom 
Requires:         R-stats 
Requires:         R-CRAN-terra 

%description
Estimates an ecological niche using occurrence data, covariates, and
kernel density-based estimation methods. For a single species with
presence and absence data, the 'envi' package uses the spatial relative
risk function that is estimated using the 'sparr' package. Details about
the 'sparr' package methods can be found in the tutorial: Davies et al.
(2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can
be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More
information about relative risk functions using kernel density estimation
can be found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}