Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14e' (ED25519) to the list of known hosts. INFO: Calling: curl -H Pragma: -o phylolm.hp_0.0-1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-phylolm.hp/phylolm.hp_0.0-1.tar.gz/md5/7ca887ba665f0145ee88f2c907c40381/phylolm.hp_0.0-1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8398 100 8398 0 0 139k 0 --:--:-- --:--:-- --:--:-- 141k INFO: Reading stdout from command: md5sum phylolm.hp_0.0-1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp/R-CRAN-phylolm.hp.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731549262.531950 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp/R-CRAN-phylolm.hp.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731549262.531950 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp/R-CRAN-phylolm.hp.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1731549262.531950/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 654.9 KiB/s | 29.5 KiB | 00m00s fedora 100% | 579.6 KiB/s | 31.3 KiB | 00m00s Copr repository 100% | 28.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 11.9 MiB/s | 12.3 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.4-8.fc40 updates 5.8 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 40-39 updates 19.1 KiB findutils x86_64 1:4.9.0-9.fc40 updates 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39-22.fc40 updates 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 288-1.fc40 updates 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-4.fc40 updates 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40.2-1.fc40 updates 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc40 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.27-1.fc40 updates 66.3 KiB ansible-srpm-macros noarch 1-16.fc40 updates 35.7 KiB audit-libs x86_64 4.0.2-1.fc40 updates 327.4 KiB authselect x86_64 1.5.0-6.fc40 updates 153.6 KiB authselect-libs x86_64 1.5.0-6.fc40 updates 818.2 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.41-37.fc40 updates 26.4 MiB binutils-gold x86_64 2.41-37.fc40 updates 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc40 updates 2.4 MiB coreutils-common x86_64 9.4-8.fc40 updates 11.4 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20241011-1.git5930b9a.fc40 updates 158.0 KiB curl x86_64 8.6.0-10.fc40 updates 738.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-18.fc40 updates 199.3 KiB dwz x86_64 0.15-8.fc40 updates 294.9 KiB ed x86_64 1.20.2-1.fc40 updates 146.9 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.192-4.fc40 updates 2.7 MiB elfutils-debuginfod-client x86_64 0.192-4.fc40 updates 76.1 KiB elfutils-default-yama-scope noarch 0.192-4.fc40 updates 1.8 KiB elfutils-libelf x86_64 0.192-4.fc40 updates 1.2 MiB elfutils-libs x86_64 0.192-4.fc40 updates 670.3 KiB fedora-gpg-keys noarch 40-2 updates 124.7 KiB fedora-release noarch 40-39 updates 0.0 B fedora-release-identity-basic noarch 40-39 updates 654.0 B fedora-repos noarch 40-2 updates 4.9 KiB file x86_64 5.45-4.fc40 fedora 103.5 KiB file-libs x86_64 5.45-4.fc40 fedora 9.9 MiB filesystem x86_64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.3.2-1.fc40 updates 39.0 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 15.2-2.fc40 updates 13.0 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-1.fc40 updates 747.0 B glibc x86_64 2.39-22.fc40 updates 6.6 MiB glibc-common x86_64 2.39-22.fc40 updates 1.0 MiB glibc-gconv-extra x86_64 2.39-22.fc40 updates 7.8 MiB gmp x86_64 1:6.2.1-8.fc40 fedora 794.6 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.5.0-1.fc40 fedora 60.6 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB json-c x86_64 0.17-3.fc40 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-23.fc40 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.3-1.fc40 updates 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-7.fc40 updates 922.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40.2-1.fc40 updates 258.6 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc40 updates 219.8 KiB libcap-ng x86_64 0.8.4-4.fc40 fedora 73.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.6.0-10.fc40 updates 776.8 KiB libeconf x86_64 0.6.2-2.fc40 updates 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40.2-1.fc40 updates 362.9 KiB libffi x86_64 3.4.4-7.fc40 fedora 81.6 KiB libgcc x86_64 14.2.1-3.fc40 updates 274.6 KiB libgomp x86_64 14.2.1-3.fc40 updates 523.6 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40.2-1.fc40 updates 355.8 KiB libnghttp2 x86_64 1.59.0-3.fc40 updates 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.1-2.fc40 updates 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.7-5.fc40 updates 177.0 KiB libsemanage x86_64 3.7-2.fc40 updates 293.5 KiB libsepol x86_64 3.7-2.fc40 updates 817.9 KiB libsmartcols x86_64 2.40.2-1.fc40 updates 180.4 KiB libssh x86_64 0.10.6-5.fc40 fedora 509.3 KiB libssh-config noarch 0.10.6-5.fc40 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc40 updates 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.6-0.fc40 updates 202.7 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc40 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40.2-1.fc40 updates 37.5 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-10.fc40 updates 267.5 KiB libxml2 x86_64 2.12.8-1.fc40 updates 1.7 MiB libzstd x86_64 1.5.6-1.fc40 updates 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-4.fc40 updates 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 fedora 104.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.2-3.fc40 updates 7.8 MiB p11-kit x86_64 0.25.5-1.fc40 updates 2.2 MiB p11-kit-trust x86_64 0.25.5-1.fc40 updates 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.1-3.fc40 updates 1.8 MiB pam-libs x86_64 1.6.1-3.fc40 updates 135.0 KiB pcre2 x86_64 10.44-1.fc40 updates 653.5 KiB pcre2-syntax noarch 10.44-1.fc40 updates 251.6 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.1-2.fc40 updates 82.9 KiB pkgconf-m4 noarch 2.1.1-2.fc40 updates 13.9 KiB pkgconf-pkg-config x86_64 2.1.1-2.fc40 updates 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.0-1.fc40 updates 1.9 KiB python-srpm-macros noarch 3.12-8.fc40 updates 50.6 KiB qt5-srpm-macros noarch 5.15.15-1.fc40 updates 500.0 B qt6-srpm-macros noarch 6.7.2-2.fc40 updates 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.7.0-1.fc40 updates 2.4 MiB rust-srpm-macros noarch 26.3-1.fc40 updates 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 fedora 1.4 MiB systemd-libs x86_64 255.13-1.fc40 updates 1.9 MiB util-linux-core x86_64 2.40.2-1.fc40 updates 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc40 updates 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc40 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc40 updates 134.0 KiB zstd x86_64 1.5.6-1.fc40 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). 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KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-1.fc40.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-1.fc40.x86_64 [ 77/155] Installing util-linux-core-0: 100% | 106.1 MiB/s | 1.5 MiB | 00m00s [ 78/155] Installing tar-2:1.35-3.fc40. 100% | 196.7 MiB/s | 3.0 MiB | 00m00s [ 79/155] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [ 80/155] Installing shadow-utils-2:4.1 100% | 70.8 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 [ 81/155] Installing libutempter-0:1.2. 100% | 19.4 MiB/s | 59.7 KiB | 00m00s [ 82/155] Installing zip-0:3.0-40.fc40. 100% | 138.1 MiB/s | 707.1 KiB | 00m00s [ 83/155] Installing gdbm-1:1.23-6.fc40 100% | 91.0 MiB/s | 465.8 KiB | 00m00s [ 84/155] Installing cyrus-sasl-lib-0:2 100% | 228.3 MiB/s | 2.3 MiB | 00m00s [ 85/155] Installing zstd-0:1.5.6-1.fc4 100% | 279.3 MiB/s | 1.7 MiB | 00m00s [ 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MiB/s | 525.0 KiB | 00m00s [ 97/155] Installing libpkgconf-0:2.1.1 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [ 98/155] Installing pkgconf-0:2.1.1-2. 100% | 41.7 MiB/s | 85.4 KiB | 00m00s [ 99/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [100/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [101/155] Installing libverto-0:0.3.2-8 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [102/155] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.9 KiB | 00m00s [103/155] Installing libbrotli-0:1.1.0- 100% | 203.1 MiB/s | 831.8 KiB | 00m00s [104/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [105/155] Installing libnghttp2-0:1.59. 100% | 81.6 MiB/s | 167.2 KiB | 00m00s [106/155] Installing coreutils-common-0 100% | 243.9 MiB/s | 11.5 MiB | 00m00s [107/155] Installing openssl-libs-1:3.2 100% | 279.5 MiB/s | 7.8 MiB | 00m00s [108/155] Installing coreutils-0:9.4-8. 100% | 135.5 MiB/s | 5.8 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc40 >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc40.no [109/155] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc4 >>> Stop post-install scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc40.n [110/155] Installing krb5-libs-0:1.21.3 100% | 153.3 MiB/s | 2.3 MiB | 00m00s [111/155] Installing libtirpc-0:1.3.6-0 100% | 66.6 MiB/s | 204.5 KiB | 00m00s [112/155] Installing gzip-0:1.13-1.fc40 100% | 95.4 MiB/s | 390.6 KiB | 00m00s [113/155] Installing authselect-libs-0: 100% | 47.9 MiB/s | 833.2 KiB | 00m00s [114/155] Installing libarchive-0:3.7.2 100% | 180.6 MiB/s | 924.5 KiB | 00m00s [115/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [116/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [117/155] Installing libpwquality-0:1.4 100% | 42.0 MiB/s | 430.1 KiB | 00m00s [118/155] Installing libnsl2-0:2.0.1-1. 100% | 28.8 MiB/s | 59.0 KiB | 00m00s [119/155] Installing pam-0:1.6.1-3.fc40 100% | 67.4 MiB/s | 1.8 MiB | 00m00s [120/155] Installing libssh-0:0.10.6-5. 100% | 124.8 MiB/s | 511.4 KiB | 00m00s [121/155] Installing rpm-sequoia-0:1.7. 100% | 236.8 MiB/s | 2.4 MiB | 00m00s [122/155] Installing rpm-libs-0:4.19.1. 100% | 173.7 MiB/s | 711.4 KiB | 00m00s [123/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.4 KiB | 00m00s [124/155] Installing openldap-0:2.6.7-1 100% | 124.8 MiB/s | 638.9 KiB | 00m00s [125/155] Installing libcurl-0:8.6.0-10 100% | 151.9 MiB/s | 777.9 KiB | 00m00s [126/155] Installing elfutils-libs-0:0. 100% | 164.1 MiB/s | 672.1 KiB | 00m00s [127/155] Installing elfutils-debuginfo 100% | 25.5 MiB/s | 78.2 KiB | 00m00s [128/155] Installing binutils-0:2.41-37 100% | 223.8 MiB/s | 26.4 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-37.fc40.x86_64 >>> Stop post-install scriptlet: binutils-0:2.41-37.fc40.x86_64 [129/155] Installing binutils-gold-0:2. 100% | 88.3 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-37.fc40.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.41-37.fc40.x86_64 [130/155] Installing elfutils-0:0.192-4 100% | 190.0 MiB/s | 2.7 MiB | 00m00s [131/155] Installing gdb-minimal-0:15.2 100% | 270.7 MiB/s | 13.0 MiB | 00m00s [132/155] Installing debugedit-0:5.0-18 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [133/155] Installing rpm-build-libs-0:4 100% | 97.3 MiB/s | 199.2 KiB | 00m00s [134/155] Installing curl-0:8.6.0-10.fc 100% | 30.1 MiB/s | 740.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [135/155] Installing rpm-0:4.19.1.1-1.f 100% | 79.9 MiB/s | 2.4 MiB | 00m00s [136/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [137/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [138/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [139/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [140/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [141/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 384.0 B | 00m00s [142/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [143/155] Installing kernel-srpm-macros 100% | 2.3 MiB/s | 2.3 KiB | 00m00s [144/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [145/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [148/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 50.6 MiB/s | 51.8 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 46.9 MiB/s | 191.9 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 44.4 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/155] Installing util-linux-0:2.40. 100% | 78.1 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-1.fc40.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 255.1 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0 >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.69_v8.0.401-1.0.fc >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.27-1.fc40.x86_64 ansible-srpm-macros-1-16.fc40.noarch audit-libs-4.0.2-1.fc40.x86_64 authselect-1.5.0-6.fc40.x86_64 authselect-libs-1.5.0-6.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-37.fc40.x86_64 binutils-gold-2.41-37.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc40.noarch coreutils-9.4-8.fc40.x86_64 coreutils-common-9.4-8.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20241011-1.git5930b9a.fc40.noarch curl-8.6.0-10.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-18.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-8.fc40.x86_64 ed-1.20.2-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.192-4.fc40.x86_64 elfutils-debuginfod-client-0.192-4.fc40.x86_64 elfutils-default-yama-scope-0.192-4.fc40.noarch elfutils-libelf-0.192-4.fc40.x86_64 elfutils-libs-0.192-4.fc40.x86_64 fedora-gpg-keys-40-2.noarch fedora-release-40-39.noarch fedora-release-common-40-39.noarch fedora-release-identity-basic-40-39.noarch fedora-repos-40-2.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-9.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.2-1.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-15.2-2.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc40.noarch glibc-2.39-22.fc40.x86_64 glibc-common-2.39-22.fc40.x86_64 glibc-gconv-extra-2.39-22.fc40.x86_64 glibc-minimal-langpack-2.39-22.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch gpg-pubkey-a15b79cc-63d04c2c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 json-c-0.17-3.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.3-1.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-7.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40.2-1.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-10.fc40.x86_64 libeconf-0.6.2-2.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40.2-1.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.2.1-3.fc40.x86_64 libgomp-14.2.1-3.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40.2-1.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.1-2.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.7-5.fc40.x86_64 libsemanage-3.7-2.fc40.x86_64 libsepol-3.7-2.fc40.x86_64 libsmartcols-2.40.2-1.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.2.1-3.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.6-0.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40.2-1.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-10.fc40.x86_64 libxml2-2.12.8-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-4.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.2-3.fc40.x86_64 p11-kit-0.25.5-1.fc40.x86_64 p11-kit-trust-0.25.5-1.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-3.fc40.x86_64 pam-libs-1.6.1-3.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.44-1.fc40.x86_64 pcre2-syntax-10.44-1.fc40.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.1-2.fc40.x86_64 pkgconf-m4-2.1.1-2.fc40.noarch pkgconf-pkg-config-2.1.1-2.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.16.0-1.fc40.noarch python-srpm-macros-3.12-8.fc40.noarch qt5-srpm-macros-5.15.15-1.fc40.noarch qt6-srpm-macros-6.7.2-2.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-288-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.7.0-1.fc40.x86_64 rust-srpm-macros-26.3-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-4.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.13-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40.2-1.fc40.x86_64 util-linux-core-2.40.2-1.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-4.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.7-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1731549262.531950/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-t29kgk5x/R-CRAN-phylolm.hp/R-CRAN-phylolm.hp.spec) Config(child) 0 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm) Config(fedora-40-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1731549262.531950/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm Start: build setup for R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Updating and loading repositories: updates 100% | 1.0 MiB/s | 29.5 KiB | 00m00s fedora 100% | 1.0 MiB/s | 31.3 KiB | 00m00s Copr repository 100% | 28.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-ggplot2 noarch 3.5.1-1.fc40.copr7361224 copr_base 7.1 MiB R-CRAN-phylolm x86_64 2.6.5-1.fc40.copr8099365 copr_base 633.1 KiB R-CRAN-rr2 noarch 1.1.1-1.fc40.copr7370353 copr_base 171.5 KiB R-CRAN-vegan x86_64 2.6.8-1.fc40.copr7951522 copr_base 4.7 MiB R-devel x86_64 4.4.2-1.fc40 updates 0.0 B Installing dependencies: R-CRAN-MASS x86_64 7.3.61-1.fc40.copr7613806 copr_base 1.8 MiB R-CRAN-Matrix x86_64 1.7.1-1.fc40.copr8157422 copr_base 8.2 MiB R-CRAN-R6 noarch 2.5.1-1.fc40.copr7349938 copr_base 115.9 KiB R-CRAN-RColorBrewer noarch 1.1.3-1.fc40.copr7349948 copr_base 63.6 KiB R-CRAN-Rcpp x86_64 1.0.13.1-1.fc40.copr8204071 copr_base 8.4 MiB R-CRAN-ape x86_64 5.8-1.fc40.copr7356134 copr_base 4.3 MiB R-CRAN-boot noarch 1.3.31-1.fc40.copr7951483 copr_base 1.1 MiB R-CRAN-cli x86_64 3.6.3-1.fc40.copr7649835 copr_base 2.4 MiB R-CRAN-cluster x86_64 2.1.6-1.fc40.copr7352635 copr_base 996.2 KiB R-CRAN-codetools noarch 0.2.20-1.fc40.copr7352636 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R-CRAN-viridisLite noarch 0.4.2-1.fc40.copr7349928 copr_base 1.3 MiB R-CRAN-withr noarch 3.0.2-1.fc40.copr8184963 copr_base 395.1 KiB R-core x86_64 4.4.2-1.fc40 updates 101.7 MiB R-core-devel x86_64 4.4.2-1.fc40 updates 395.8 KiB R-java x86_64 4.4.2-1.fc40 updates 0.0 B R-java-devel x86_64 4.4.2-1.fc40 updates 0.0 B R-littler x86_64 0.3.19-4.fc40 updates 157.9 KiB R-rpm-macros noarch 1.2.1-10.fc40 updates 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-12.fc40 fedora 192.7 KiB alsa-lib x86_64 1.2.12-1.fc40 updates 1.4 MiB annobin-docs noarch 12.60-1.fc40 updates 96.2 KiB annobin-plugin-gcc x86_64 12.60-1.fc40 updates 976.2 KiB avahi-libs x86_64 0.8-26.fc40 fedora 166.3 KiB brotli x86_64 1.1.0-3.fc40 fedora 31.8 KiB brotli-devel x86_64 1.1.0-3.fc40 fedora 65.6 KiB bzip2-devel x86_64 1.0.8-18.fc40 fedora 309.8 KiB cairo x86_64 1.18.0-3.fc40 fedora 1.7 MiB cairo-devel x86_64 1.18.0-3.fc40 fedora 2.3 MiB cmake-filesystem x86_64 3.30.5-1.fc40 updates 0.0 B copy-jdk-configs noarch 4.1-5.fc40 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fedora 49.1 KiB guile30 x86_64 3.0.7-12.fc40 fedora 51.5 MiB harfbuzz x86_64 8.5.0-1.fc40 updates 2.7 MiB harfbuzz-devel x86_64 8.5.0-1.fc40 updates 5.1 MiB harfbuzz-icu x86_64 8.5.0-1.fc40 updates 15.5 KiB java-21-openjdk x86_64 1:21.0.5.0.11-1.fc40 updates 1.1 MiB java-21-openjdk-devel x86_64 1:21.0.5.0.11-1.fc40 updates 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.5.0.11-1.fc40 updates 203.9 MiB javapackages-filesystem noarch 6.2.0-9.fc40 fedora 1.9 KiB jbigkit-libs x86_64 2.1-29.fc40 fedora 117.6 KiB kernel-headers x86_64 6.11.3-200.fc40 updates 6.4 MiB less x86_64 643-6.fc40 updates 372.6 KiB libICE x86_64 1.1.1-3.fc40 fedora 181.2 KiB libRmath x86_64 4.4.2-1.fc40 updates 246.8 KiB libRmath-devel x86_64 4.4.2-1.fc40 updates 17.4 KiB libSM x86_64 1.2.4-3.fc40 fedora 97.3 KiB libX11 x86_64 1.8.10-2.fc40 updates 1.3 MiB libX11-common noarch 1.8.10-2.fc40 updates 1.1 MiB libX11-devel x86_64 1.8.10-2.fc40 updates 1.0 MiB libX11-xcb x86_64 1.8.10-2.fc40 updates 15.0 KiB libXau x86_64 1.0.11-6.fc40 fedora 66.9 KiB libXau-devel x86_64 1.0.11-6.fc40 fedora 6.4 KiB libXcomposite x86_64 0.4.6-3.fc40 fedora 44.5 KiB libXext x86_64 1.3.6-1.fc40 fedora 90.1 KiB libXext-devel x86_64 1.3.6-1.fc40 fedora 98.9 KiB libXft x86_64 2.3.8-6.fc40 fedora 164.5 KiB libXft-devel x86_64 2.3.8-6.fc40 fedora 31.7 KiB libXi x86_64 1.8.2-1.fc40 updates 80.7 KiB libXmu x86_64 1.2.1-1.fc40 updates 187.5 KiB libXrender x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXt x86_64 1.3.0-3.fc40 fedora 425.9 KiB libXtst x86_64 1.2.5-1.fc40 updates 33.6 KiB libb2 x86_64 0.98.1-11.fc40 fedora 42.2 KiB libblkid-devel x86_64 2.40.2-1.fc40 updates 44.9 KiB libdatrie x86_64 0.2.13-9.fc40 fedora 57.9 KiB libdeflate x86_64 1.22-2.fc40 updates 118.1 KiB libdeflate-devel x86_64 1.22-2.fc40 updates 25.7 KiB libffi-devel x86_64 3.4.4-7.fc40 fedora 33.3 KiB libfontenc x86_64 1.1.7-3.fc40 fedora 65.0 KiB libgfortran x86_64 14.2.1-3.fc40 updates 3.0 MiB libicu x86_64 74.2-1.fc40 fedora 34.9 MiB libicu-devel x86_64 74.2-1.fc40 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-1.fc40 fedora 776.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libmount-devel x86_64 2.40.2-1.fc40 updates 63.5 KiB libmpc x86_64 1.3.1-5.fc40 fedora 164.7 KiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libpng-devel x86_64 2:1.6.40-3.fc40 fedora 881.5 KiB libquadmath x86_64 14.2.1-3.fc40 updates 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc40 updates 21.9 KiB libselinux-devel x86_64 3.7-5.fc40 updates 126.4 KiB libsepol-devel x86_64 3.7-2.fc40 updates 120.3 KiB libstdc++-devel x86_64 14.2.1-3.fc40 updates 15.4 MiB libtextstyle x86_64 0.22.5-4.fc40 updates 195.6 KiB libthai x86_64 0.1.29-8.fc40 fedora 783.5 KiB libtiff x86_64 4.6.0-5.fc40.1 updates 1.1 MiB libtirpc-devel x86_64 1.3.6-0.fc40 updates 251.6 KiB libwebp x86_64 1.3.2-5.fc40 fedora 793.6 KiB libxcb x86_64 1.17.0-2.fc40 updates 1.1 MiB libxcb-devel x86_64 1.17.0-2.fc40 updates 2.7 MiB libxcrypt-devel x86_64 4.4.36-10.fc40 updates 30.5 KiB libxml2-devel x86_64 2.12.8-1.fc40 updates 3.4 MiB lksctp-tools x86_64 1.0.19-6.fc40 fedora 269.6 KiB lua x86_64 5.4.6-5.fc40 fedora 597.8 KiB lua-posix x86_64 36.2.1-6.fc40 fedora 599.7 KiB make x86_64 1:4.4.1-6.fc40 fedora 1.8 MiB mkfontscale x86_64 1.2.2-6.fc40 fedora 49.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB nspr x86_64 4.35.0-30.fc40 updates 316.4 KiB nss x86_64 3.105.0-1.fc40 updates 1.9 MiB nss-softokn x86_64 3.105.0-1.fc40 updates 1.9 MiB nss-softokn-freebl x86_64 3.105.0-1.fc40 updates 869.2 KiB nss-sysinit x86_64 3.105.0-1.fc40 updates 18.2 KiB nss-util x86_64 3.105.0-1.fc40 updates 230.2 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openblas-openmp64 x86_64 0.3.26-4.fc40 fedora 39.1 MiB pango x86_64 1.54.0-1.fc40 updates 996.2 KiB pcre2-devel x86_64 10.44-1.fc40 updates 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc40 updates 590.0 KiB pcre2-utf32 x86_64 10.44-1.fc40 updates 562.0 KiB pixman x86_64 0.43.4-1.fc40 updates 710.1 KiB pixman-devel x86_64 0.43.4-1.fc40 updates 49.4 KiB python-pip-wheel noarch 23.3.2-2.fc40 updates 1.5 MiB python3 x86_64 3.12.7-1.fc40 updates 31.5 KiB python3-libs x86_64 3.12.7-1.fc40 updates 41.2 MiB python3-packaging noarch 23.2-4.fc40 fedora 421.1 KiB sysprof-capture-devel x86_64 46.0-1.fc40 fedora 252.8 KiB tcl x86_64 1:8.6.13-2.fc40 fedora 4.2 MiB tcl-devel x86_64 1:8.6.13-2.fc40 fedora 809.0 KiB tk x86_64 1:8.6.13-3.fc40 fedora 3.6 MiB tk-devel x86_64 1:8.6.13-3.fc40 fedora 983.9 KiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 fedora 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 fedora 122.7 KiB tzdata noarch 2024a-5.fc40 updates 1.6 MiB tzdata-java noarch 2024a-5.fc40 updates 101.7 KiB xdg-utils noarch 1.2.1-1.fc40 fedora 346.3 KiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-2.fc40 updates 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc40 fedora 255.8 KiB zlib-ng-compat-devel x86_64 2.1.7-2.fc40 updates 106.8 KiB Transaction Summary: Installing: 223 packages Total size of inbound packages is 342 MiB. Need to download 61 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). 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Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch >>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-38.fc40.noarch [137/225] Installing java-21-openjdk-1: 100% | 42.2 MiB/s | 1.1 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-1:21.0.5.0.11-1.fc40.x86_64 >>> Stop post-install scriptlet: java-21-openjdk-1:21.0.5.0.11-1.fc40.x86_64 [138/225] Installing java-21-openjdk-de 100% | 184.2 MiB/s | 11.2 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-devel-1:21.0.5.0.11-1.fc40.x >>> Stop post-install scriptlet: java-21-openjdk-devel-1:21.0.5.0.11-1.fc40.x86_ [139/225] Installing harfbuzz-icu-0:8.5 100% | 5.3 MiB/s | 16.3 KiB | 00m00s [140/225] Installing fontconfig-devel-0 100% | 12.4 MiB/s | 151.9 KiB | 00m00s [141/225] Installing freetype-devel-0:2 100% | 140.3 MiB/s | 7.9 MiB | 00m00s [142/225] Installing cairo-devel-0:1.18 100% | 190.9 MiB/s | 2.3 MiB | 00m00s [143/225] Installing harfbuzz-devel-0:8 100% | 212.6 MiB/s | 5.1 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98.2 MiB/s | 402.4 KiB | 00m00s [219/225] Installing R-java-devel-0:4.4 100% | 0.0 B/s | 124.0 B | 00m00s [220/225] Installing R-devel-0:4.4.2-1. 100% | 0.0 B/s | 124.0 B | 00m00s [221/225] Installing R-CRAN-rr2-0:1.1.1 100% | 34.9 MiB/s | 178.8 KiB | 00m00s [222/225] Installing R-CRAN-ggplot2-0:3 100% | 120.6 MiB/s | 7.2 MiB | 00m00s [223/225] Installing R-CRAN-vegan-0:2.6 100% | 101.7 MiB/s | 4.8 MiB | 00m00s [224/225] Installing gcc-plugin-annobin 100% | 1.9 MiB/s | 58.6 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch [225/225] Installing annobin-plugin-gcc 100% | 917.3 KiB/s | 977.9 KiB | 00m01s >>> Running trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:288-1.fc40.noarch >>> Running post-transaction scriptlet: crypto-policies-scripts-0:20241011-1.git >>> Stop post-transaction scriptlet: crypto-policies-scripts-0:20241011-1.git593 >>> Running post-transaction scriptlet: nss-0:3.105.0-1.fc40.x86_64 >>> Stop post-transaction scriptlet: nss-0:3.105.0-1.fc40.x86_64 >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-5.fc40.noarch >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.5.0.11-1 >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.5.0.11-1.fc >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.5.0.11-1.fc40.x86 >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.5.0.11-1.fc40.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.5.0.11-1.fc >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.5.0.11-1.fc40. >>> Running trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-22.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.3-1.fc40.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.26-12.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-6.fc40.x86_64 Warning: skipped PGP checks for 61 package(s). Finish: build setup for R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm Start: rpmbuild R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9KkZSi warning: source_date_epoch_from_changelog set but %changelog is missing + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf phylolm.hp + /usr/bin/mkdir -p phylolm.hp + cd phylolm.hp + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/phylolm.hp_0.0-1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/phylolm.hp-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/phylolm.hp-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d phylolm.hp/src ']' + true + '[' -d phylolm.hp/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hkvLlG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd phylolm.hp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.rUu7Z6 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd phylolm.hp + mkdir -p /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64/usr/local/lib/R/library phylolm.hp * installing *source* package ‘phylolm.hp’ ... ** package ‘phylolm.hp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘phylolm.hp’ finding HTML links ... done creatbin html genList html odd html phyloglm.hp html phylolm.hp html plot.phyloglmhp html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phylolm.hp) + test -d phylolm.hp/src + rm -f /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.0.1-1.fc40.copr8256717 --unique-debug-suffix -0.0.1-1.fc40.copr8256717.x86_64 --unique-debug-src-base R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/phylolm.hp find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.noarch Provides: R-CRAN-phylolm.hp = 0.0.1-1.fc40.copr8256717 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.mNyFOm + umask 022 + cd /builddir/build/BUILD + cd phylolm.hp + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.C2MTgi + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/phylolm.hp-SPECPARTS + rm -rf phylolm.hp phylolm.hp.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm Finish: build phase for R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1731549262.531950/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-phylolm.hp-0.0.1-1.fc40.copr8256717.src.rpm) Config(child) 0 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-phylolm.hp", "epoch": null, "version": "0.0.1", "release": "1.fc40.copr8256717", "arch": "noarch" }, { "name": "R-CRAN-phylolm.hp", "epoch": null, "version": "0.0.1", "release": "1.fc40.copr8256717", "arch": "src" } ] } RPMResults finished