plantcare_plot {BioVizSeq} | R Documentation |
plantcare_plot
Description
Visualization of cis-element in plantcare result file
Usage
plantcare_plot(
plantcare_file,
promoter_length = 2000,
the_order = NULL,
shape = "Rect",
r = 6,
legend_size = 15,
element_color = NULL
)
Arguments
plantcare_file |
The path of plantcare result file (.tab). |
promoter_length |
The promoter length. |
the_order |
The path of order file. A List of Gene ID , One ID Per Line. |
shape |
RoundRect or Rect. |
r |
The radius of rounded corners. |
legend_size |
The size of legend. |
element_color |
The color set of cis-element. |
Value
p
Author(s)
Shiqi Zhao
Examples
plantcare_path <- system.file("extdata", "plantCARE_output.tab", package = "BioVizSeq")
plantcare_plot(plantcare_path, promoter_length = 2000)
[Package BioVizSeq version 0.1.0 Index]