plot.phyloglmhp {phylolm.hp} | R Documentation |
Plot for a phyloglm.hp
object
Description
Plot for a phyloglm.hp
object
Usage
## S3 method for class 'phyloglmhp'
plot(x, plot.perc = FALSE, commonality = FALSE, color = NULL, dig = 4, ...)
Arguments
x |
A |
plot.perc |
Logical;if TRUE, the bar plot (based on ggplot2 package) of the percentage to individual effects of variables and phylogenetic signal towards total explained variation, the default is FALSE to show plot with original individual effects. |
commonality |
Logical; If TRUE, the result of commonality analysis is shown, the default is FALSE. |
color |
Color of variables. |
dig |
Integer; number of decimal places in Venn diagram. |
... |
unused |
Value
a ggplot object
Author(s)
Jiangshan Lai lai@njfu.edu.cn
Examples
library(phylolm)
library(rr2)
set.seed(123456)
tre <- rtree(50)
x1 <- rTrait(n=1, phy=tre)
x2 <- rTrait(n=1, phy=tre)
X <- cbind(rep(1, 50), x1, x2)
y <- rbinTrait(n=1, phy=tre, beta=c(-1, 0.8, 0.9), alpha=1, X=X)
dat <- data.frame(trait01=y, predictor1=x1, predictor2=x2)
fit <- phyloglm(trait01 ~ predictor1 + predictor2, phy=tre, data=dat)
plot(phyloglm.hp(fit,commonality=TRUE))
plot(phyloglm.hp(fit,commonality=TRUE),commonality=TRUE)
[Package phylolm.hp version 0.0-2 Index]