gff_to_loc {BioVizSeq} | R Documentation |
gff_to_loc
Description
Extract the location information of element from gff or gtf file
Usage
gff_to_loc(gff_data, mRNA_ID = NULL)
Arguments
gff_data |
gff file. |
mRNA_ID |
The mRNA you selected. If NULL, it means selecting all mRNAs. |
Value
list
Author(s)
Shiqi Zhao
Examples
gff_path <- system.file("extdata", "test.gff", package = "BioVizSeq")
gff_data <- read.table(gff_path, header = FALSE, sep = '\t')
gff_loc <- gff_to_loc(gff_data)
ID_path <- system.file("extdata", "ID_select.csv", package = "BioVizSeq")
mRNA_ID <- readLines(ID_path)
gff_loc <- gff_to_loc(gff_data, mRNA_ID=mRNA_ID)
[Package BioVizSeq version 0.1.1 Index]