name_or_id2df {pctax} | R Documentation |
Transfer taxon name or taxid to the lineage dataframe
Description
Transfer taxon name or taxid to the lineage dataframe
Usage
name_or_id2df(
name_or_id,
mode = "name",
add_prefix = TRUE,
fill_miss_rank = TRUE,
data_dir = NULL
)
Arguments
name_or_id |
name or taxid |
mode |
"id" or "name" |
add_prefix |
add_prefix |
fill_miss_rank |
fill_miss_rank |
data_dir |
directory containing nodes.dmp and names.dmp (default "/Users/asa/.taxonkit") |
Value
dataframe
See Also
Other Rtaxonkit:
check_taxonkit()
,
download_taxonkit_dataset()
,
install_taxonkit()
,
taxonkit_filter()
,
taxonkit_lca()
,
taxonkit_lineage()
,
taxonkit_list()
,
taxonkit_name2taxid()
,
taxonkit_reformat()
Examples
## Not run:
name_or_id2df(c("Homo sapiens", "Akkermansia muciniphila ATCC BAA-835"))
## End(Not run)
[Package pctax version 0.1.3 Index]