checkLocusANHIG {SSHAARP}R Documentation

Check locus validity

Description

Checks if the locus in the entered variant is a protein-coding gene annotated by the IPD-IMGT/HLA Database

Usage

checkLocusANHIG(variant)

Arguments

variant

An amino acid motif or allele with an HLA locus name followed by an asterisk. This function ONLY evaluates if the locus in the entered variant is a protein-coding gene.

Value

TRUE if locus in entered variant are in the IPD-IMGT/HLA Database. Otherwise, a vector with FALSE and an error message is returned.

Note

For internal SSHAARP use only.

Examples

#Example of valid locus in a motif
checkLocusANHIG("DRB1*26F~28E")
#[1] TRUE

#Example of an invalid locus in an allele
checkLocusANHIG("BOO*01:01")
#[1] "FALSE"                     "BOO is not a valid locus."

[Package SSHAARP version 2.0.5 Index]