Geometric Morphometric Tools to Align, Scale, and Compare "Shape" of Menstrual Cycle Hormones


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Documentation for package ‘moRphomenses’ version 1.0.2

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mm_ArrayData Array Data
mm_BuildModel Build, implement, visualize multivariate linear model.
mm_CalcShapespace Define Shapespace of aligned dataset.
mm_CheckImputation Check Imputation
mm_ColorLeaves Color leves of a dendrogram
mm_CompModel Compare Model Metrics
mm_CompModel_Full Compare Complex Model Metrics
mm_coords_to_shape Visualize shape of target coordinates
mm_data Sample hormone dataset
mm_Diagnostics Run a suite of diagnostic analyses.
mm_ellipse Add confidence ellipses to an active scatterplot.
mm_Explorer Launch mm_Explorer
mm_FillMissing Impute Missing Data
mm_FlattenArray Flatten Array
mm_get_interval Create equallly spaced intervals.
mm_grps_PlotArray Plot Arrays of groups
mm_grp_dists Distance from Centroid
mm_mute_cols Take a color and modify it
mm_Phenotype Generate Phenotypes
mm_PlotArray Plot Array Plot individuals and optionally mean form
mm_pretty_pca Plot Calendar Days
mm_ScreePlot Scree Plot
mm_SilPlot Silhouette Width Plot
mm_transf_geom Geometric Scaling
mm_transf_log natural log transform
mm_transf_log10 Common log transform
mm_transf_minmax Min-Max Scaling
mm_transf_zscore Z scores
mm_VizModel Visualize Multivariate LM
mm_VizShapespace Visualize PC axes
moRphomenses Geometric Morphometric Analysis of Hormone Cycle Phenotypes
moRphomenses_PACKAGE Geometric Morphometric Analysis of Hormone Cycle Phenotypes
print_summary Print basic summary