%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  qPRAentry
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Quantitative Pest Risk Assessment at the Entry Step

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-eurostat >= 4.0.0
BuildRequires:    R-CRAN-giscoR >= 0.6.0
BuildRequires:    R-CRAN-bsplus 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-ggiraph 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-memoise 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinycssloaders 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-eurostat >= 4.0.0
Requires:         R-CRAN-giscoR >= 0.6.0
Requires:         R-CRAN-bsplus 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-ggiraph 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-memoise 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinycssloaders 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-stats 
Requires:         R-CRAN-tidyr 

%description
Supports risk assessors in performing the entry step of the quantitative
Pest Risk Assessment. It allows the estimation of the amount of a plant
pest entering a risk assessment area (in terms of founder populations)
through the calculation of the imported commodities that could be
potential pathways of pest entry, and the development of a pathway model.
Two 'Shiny' apps based on the functionalities of the package are included,
that simplify the process of assessing the risk of entry of plant pests.
The approach is based on the work of the European Food Safety Authority
(EFSA PLH Panel et al., 2018) <doi:10.2903/j.efsa.2018.5350>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}