%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  HospitalNetwork
%global packver   0.9.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.9.4
Release:          1%{?dist}%{?buildtag}
Summary:          Building Networks of Hospitals Through Patients Transfers

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-R6 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggraph 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-R6 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggraph 

%description
Set of tools to help interested researchers to build hospital networks
from data on hospitalized patients transferred between hospitals. Methods
provided have been used in Donker T, Wallinga J, Grundmann H. (2010)
<doi:10.1371/journal.pcbi.1000715>, and Nekkab N, Crépey P, Astagneau P,
Opatowski L, Temime L. (2020) <doi:10.1038/s41598-020-71212-6>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}