summariseConceptIdCounts {OmopSketch} | R Documentation |
Summarise concept use in patient-level data
Description
Summarise concept use in patient-level data
Usage
summariseConceptIdCounts(
cdm,
omopTableName,
countBy = "record",
year = FALSE,
sex = FALSE,
ageGroup = NULL,
sample = NULL,
dateRange = NULL
)
Arguments
cdm |
A cdm object |
omopTableName |
A character vector of the names of the tables to summarise in the cdm object. |
countBy |
Either "record" for record-level counts or "person" for person-level counts |
year |
TRUE or FALSE. If TRUE code use will be summarised by year. |
sex |
TRUE or FALSE. If TRUE code use will be summarised by sex. |
ageGroup |
A list of ageGroup vectors of length two. Code use will be thus summarised by age groups. |
sample |
An integer to sample the tables to only that number of records. If NULL no sample is done. |
dateRange |
A list containing the minimum and the maximum dates defining the time range within which the analysis is performed. |
Value
A summarised_result object with results overall and, if specified, by strata.
Examples
library(OmopSketch)
library(CDMConnector)
library(duckdb)
requireEunomia()
con <- dbConnect(duckdb(), eunomiaDir())
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")
summariseConceptIdCounts(cdm, "condition_occurrence")
[Package OmopSketch version 0.2.0 Index]