summariseConceptSetCounts {OmopSketch}R Documentation

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Description

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Usage

summariseConceptSetCounts(
  cdm,
  conceptSet,
  countBy = c("record", "person"),
  concept = TRUE,
  interval = "overall",
  sex = FALSE,
  ageGroup = NULL,
  sample = NULL,
  dateRange = NULL
)

Arguments

cdm

A cdm object

conceptSet

List of concept IDs to summarise.

countBy

Either "record" for record-level counts or "person" for person-level counts

concept

TRUE or FALSE. If TRUE code use will be summarised by concept.

interval

Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".

sex

TRUE or FALSE. If TRUE code use will be summarised by sex.

ageGroup

A list of ageGroup vectors of length two. Code use will be thus summarised by age groups.

sample

An integer to sample the tables in the cdm object to only that number of records. If NULL no sample is done.

dateRange

A list containing the minimum and the maximum dates defining the time range within which the analysis is performed.

Value

A summarised_result object with results overall and, if specified, by strata.

Examples


library(OmopSketch)

cdm <- mockOmopSketch()

cs <- list(sumatriptan = c(35604883, 35604879, 35604880, 35604884))

results <- summariseConceptSetCounts(cdm, conceptSet = cs)

results

PatientProfiles::mockDisconnect(cdm)



[Package OmopSketch version 0.2.0 Index]