%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname psHarmonize %global packver 0.3.5 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.3.5 Release: 1%{?dist}%{?buildtag} Summary: Creates a Harmonized Dataset Based on a Set of Instructions License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 2.10 Requires: R-core >= 2.10 BuildArch: noarch BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-glue BuildRequires: R-CRAN-magrittr BuildRequires: R-CRAN-purrr BuildRequires: R-CRAN-RColorBrewer BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-rmarkdown BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-tidyr Requires: R-CRAN-dplyr Requires: R-CRAN-glue Requires: R-CRAN-magrittr Requires: R-CRAN-purrr Requires: R-CRAN-RColorBrewer Requires: R-CRAN-rlang Requires: R-CRAN-rmarkdown Requires: R-CRAN-stringr Requires: R-CRAN-tidyr %description Functions which facilitate harmonization of data from multiple different datasets. Data harmonization involves taking data sources with differing values, creating coding instructions to create a harmonized set of values, then making those data modifications. 'psHarmonize' will assist with data modification once the harmonization instructions are written. Coding instructions are written by the user to create a "harmonization sheet". This sheet catalogs variable names, domains (e.g. clinical, behavioral, outcomes), provides R code instructions for mapping or conversion of data, specifies the variable name in the harmonized data set, and tracks notes. The package will then harmonize the source datasets according to the harmonization sheet to create a harmonized dataset. Once harmonization is finished, the package also has functions that will create descriptive statistics using 'RMarkdown'. Data Harmonization guidelines have been described by Fortier I, Raina P, Van den Heuvel ER, et al. (2017) <doi:10.1093/ije/dyw075>. Additional details of our R package have been described by Stephen JJ, Carolan P, Krefman AE, et al. (2024) <doi:10.1016/j.patter.2024.101003>. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}