%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  segtest
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Tests for Segregation Distortion in Polyploids

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4.0
Requires:         R-core >= 3.4.0
BuildRequires:    R-CRAN-doFuture 
BuildRequires:    R-CRAN-doRNG 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-future 
BuildRequires:    R-CRAN-iterators 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-updog 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-doFuture 
Requires:         R-CRAN-doRNG 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-future 
Requires:         R-CRAN-iterators 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-updog 

%description
Provides a suite of tests for segregation distortion in F1 polyploid
populations (for now, just tetraploids). This is under different
assumptions of meiosis. Details of these methods are described in Gerard
et al. (2025) <doi:10.1007/s00122-025-04816-z>. This material is based
upon work supported by the National Science Foundation under Grant No.
2132247.  The opinions, findings, and conclusions or recommendations
expressed are those of the author and do not necessarily reflect the views
of the National Science Foundation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}