%global __brp_check_rpaths %{nil}
%global packname  InfiniumPurify
%global packver   1.3.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.3.1
Release:          3%{?dist}%{?buildtag}
Summary:          Estimate and Account for Tumor Purity in Cancer Methylation DataAnalysis

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-matrixStats 
Requires:         R-CRAN-matrixStats 

%description
The proportion of cancer cells in solid tumor sample, known as the tumor
purity, has adverse impact on a variety of data analyses if not properly
accounted for. We develop 'InfiniumPurify', which is a comprehensive R
package for estimating and accounting for tumor purity based on DNA
methylation Infinium 450k array data. 'InfiniumPurify' provides
functionalities for tumor purity estimation. In addition, it can perform
differential methylation detection and tumor sample clustering with the
consideration of tumor purities.

%prep
%setup -q -c -n %{packname}


%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%{rlibdir}/%{packname}