%global __brp_check_rpaths %{nil}
%global packname  cold
%global packver   2.0-3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.3
Release:          1%{?dist}%{?buildtag}
Summary:          Count Longitudinal Data

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.3
Requires:         R-core >= 3.5.3
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-cubature 
BuildRequires:    R-CRAN-MASS 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-utils 
Requires:         R-CRAN-cubature 
Requires:         R-CRAN-MASS 

%description
Performs regression analysis for longitudinal count data, allowing for
serial dependence among observations from a given individual and two
dimensional random effects on the linear predictor. Estimation is via
maximization of the exact likelihood of a suitably defined model. Missing
values and unbalanced data are allowed. Details can be found in the
accompanying scientific papers: Goncalves & Cabral (2021, Journal of
Statistical Software, <doi:10.18637/jss.v099.i03>) and Goncalves et al.
(2007, Computational Statistics & Data Analysis,
<doi:10.1016/j.csda.2007.03.002>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}