%global __brp_check_rpaths %{nil}
%global packname  quickNmix
%global packver   1.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Asymptotic N-Mixture Model Fitting

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-optimParallel 
BuildRequires:    R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-parallel 
Requires:         R-CRAN-optimParallel 
Requires:         R-CRAN-doParallel 

%description
For fitting N-mixture models using either FFT or asymptotic approaches.
FFT N-mixture models extend the work of Cowen et al. (2017)
<doi:10.1111/biom.12701>. Asymptotic N-mixture models extend the work of
Dail and Madsen (2011) <doi:10.1111/j.1541-0420.2010.01465.x>, to consider
asymptotic solutions to the open population N-mixture models. The FFT
models are derived and described in "Parker, M.R.P., Elliott, L., Cowen,
L.L.E. (2022). Computational efficiency and precision for replicated-count
and batch-marked hidden population models [Manuscript in preparation].
Department of Statistics and Actuarial Sciences, Simon Fraser
University.". The asymptotic models are derived and described in: "Parker,
M.R.P., Elliott, L., Cowen, L.L.E., Cao, J. (2022). Fast asymptotic
solutions for N-mixtures on large populations [Manuscript in preparation].
Department of Statistics and Actuarial Sciences, Simon Fraser
University.".

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}