%global __brp_check_rpaths %{nil}
%global packname  detectRUNS
%global packver   0.9.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.9.6
Release:          3%{?dist}%{?buildtag}
Summary:          Detect Runs of Homozygosity and Runs of Heterozygosity inDiploid Genomes

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.0
Requires:         R-core >= 3.0.0
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-iterators 
BuildRequires:    R-CRAN-itertools 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-data.table 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-iterators 
Requires:         R-CRAN-itertools 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-data.table 

%description
Detection of runs of homozygosity and of heterozygosity in diploid genomes
using two methods: sliding windows (Purcell et al (2007)
<doi:10.1086/519795>) and consecutive runs (Marras et al (2015)
<doi:10.1111/age.12259>).

%prep
%setup -q -c -n %{packname}


%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}

test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%{rlibdir}/%{packname}