%global __brp_check_rpaths %{nil}
%global packname  sicegar
%global packver   0.2.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.4
Release:          1%{?dist}%{?buildtag}
Summary:          Analysis of Single-Cell Viral Growth Curves

License:          GPL-2 | GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-minpack.lm 
BuildRequires:    R-CRAN-fBasics 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-stats 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-minpack.lm 
Requires:         R-CRAN-fBasics 
Requires:         R-CRAN-ggplot2 
Requires:         R-stats 

%description
Aims to quantify time intensity data by using sigmoidal and double
sigmoidal curves. It fits straight lines, sigmoidal, and double sigmoidal
curves on to time vs intensity data. Then all the fits are used to make
decision on which model best describes the data. This method was first
developed in the context of single-cell viral growth analysis (for
details, see Caglar et al. (2018) <doi:10.7717/peerj.4251>), and the
package name stands for "SIngle CEll Growth Analysis in R".

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}