vcf2pcadapt {pcadapt} | R Documentation |
vcfR-based converter
Description
vcf2pcadapt
uses the package vcfR
to extract the genotype information
from a vcf file and exports it under the format required by pcadapt
.
Note that this VCF converter is not maintained anymore. Please use PLINK.
Usage
vcf2pcadapt(input, output = "tmp.pcadapt", allele.sep = c("/", "|"))
Arguments
input |
a character string specifying the name of the file to be converted. |
output |
a character string indicating the name of the output file. |
allele.sep |
a vector of characters indicating what delimiters are used to separate alleles. |
[Package pcadapt version 4.3.5 Index]