write_wrapper {debar} | R Documentation |
A wrapper function to deploy the fastq and fata output functions.
Description
A wrapper function to deploy the fastq and fata output functions.
Usage
write_wrapper(x, ...)
## S3 method for class 'DNAseq'
write_wrapper(x, ..., outfile = "denoised.fastq",
outformat = "fastq", append = TRUE, keep_phred = TRUE,
phred_placeholder = "#")
Arguments
x |
a DNAseq class object. |
... |
additional arguments to be passed between methods. |
outfile |
The name of the file to output the data to. Default is "denoised.fasta". |
outformat |
The format of the output data, either fasta for fastq. Default is fastq. |
append |
Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE. |
keep_phred |
Should the original PHRED scores be kept in the output? Default is TRUE. |
phred_placeholder |
The character to input for the phred score line. Default is '#'. |
Value
a class object of code "DNAseq"
[Package debar version 0.1.1 Index]