sort_gff3 {Rgff} | R Documentation |
Sorts a GFF3 file
Description
This function produces a sorted GFF3 file from an unsorted GFF3 file. The output file will be sorted by Chromosome, Start, End (reverse) and feature (based on the precedency in feature tree)
Usage
sort_gff3(gffFile, outFile, forceOverwrite = FALSE)
Arguments
gffFile |
Path to the input GFF3 file |
outFile |
Path to the output GFF3 file, if not provided the output will be the input path (without extension) with the suffix sorted.gff3 |
forceOverwrite |
If output file exists, overwrite the existing file. (default FALSE) |
Value
Path to the sorted GFF3 file
[Package Rgff version 0.1.6 Index]