saf_from_gff3 {Rgff} | R Documentation |
Creates a SAF file from a GFF3 for the given pairs of blocks and features, note that groupBy and block vectors must have the same length
Description
This function creates a SAF file from a GFF3 for the given blocks and features
Usage
saf_from_gff3(
gffFile,
outFile,
forceOverwrite = FALSE,
features = c("gene > exon"),
sep = ">"
)
Arguments
gffFile |
Path to the input GFF file |
outFile |
Path to the output SAF file, if not provided the output path will be the input path (without extension) with the suffix ".groupBy1-block1.groupBy2-block2(...).saf" |
forceOverwrite |
If output file exists, overwrite the existing file. (default FALSE) |
features |
Vector of pairs of features, separated by '>' (see sep argument), to be used respectively as "group by" and "block" |
sep |
Separator of each "group by" and "block" provided in the feature argument (default '>') |
Value
Path to the generated SAF file
[Package Rgff version 0.1.6 Index]