%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  GoodFibes
%global packver   0.1.10
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.10
Release:          1%{?dist}%{?buildtag}
Summary:          Detection and Reconstruction of Muscle Fibers from diceCT Image Data

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-imager 
BuildRequires:    R-CRAN-rgl 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-concaveman 
BuildRequires:    R-CRAN-prodlim 
BuildRequires:    R-CRAN-splines2 
Requires:         R-CRAN-imager 
Requires:         R-CRAN-rgl 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-CRAN-concaveman 
Requires:         R-CRAN-prodlim 
Requires:         R-CRAN-splines2 

%description
Reconstruction of muscle fibers from image stacks using textural analysis.
Includes functions for tracking, smoothing, cleaning, plotting and
exporting muscle fibers. Also calculates basic fiber properties (e.g.,
length and curvature).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}