bed_complement {valr} | R Documentation |
Identify intervals in a genome not covered by a query.
Description
Identify intervals in a genome not covered by a query.
Usage
bed_complement(x, genome)
Arguments
x |
|
genome |
Value
See Also
Other single set operations:
bed_cluster()
,
bed_flank()
,
bed_merge()
,
bed_partition()
,
bed_shift()
,
bed_slop()
Examples
x <- tibble::tribble(
~chrom, ~start, ~end,
'chr1', 0, 10,
'chr1', 75, 100
)
genome <- tibble::tribble(
~chrom, ~size,
'chr1', 200
)
bed_glyph(bed_complement(x, genome))
genome <- tibble::tribble(
~chrom, ~size,
'chr1', 500,
'chr2', 600,
'chr3', 800
)
x <- tibble::tribble(
~chrom, ~start, ~end,
'chr1', 100, 300,
'chr1', 200, 400,
'chr2', 0, 100,
'chr2', 200, 400,
'chr3', 500, 600
)
# intervals not covered by x
bed_complement(x, genome)
[Package valr version 0.6.3 Index]