get_concept {ReviewR} | R Documentation |
OMOP Get Concept
Description
This function assists with transforming OMOP concept_ids to interpretable strings by retrieving the requested concepts from the appropriate OMOP concept table.
Usage
get_concept(
table_map,
db_connection,
concept_table,
concept_id,
concept_name,
table,
joinable_id,
table_concept_id,
col_name,
subject_id_field = NULL,
selected_subject = NULL
)
Arguments
table_map |
A dplyr::tibble containing a mapping between the CDM standard tables and fields to the user connected tables and fields. |
db_connection |
A DBI::dbConnect object. |
concept_table |
A string, containing the standard CDM concept table name. |
concept_id |
A string, containing the standard CDM concept id field. |
concept_name |
A string, containing the standard CDM concept name field. |
table |
A string, containing the table name that requires OMOP concepts. |
joinable_id |
A string, indicating what variable is "joinable" between the concept table and the desired table. |
table_concept_id |
A string, containing the the table concept id |
col_name |
A string, containing the desired name for the retrieved concept. |
subject_id_field |
A string, identifying which table field contains the subject id. |
selected_subject |
A numeric, or coercible to numeric containing the desired subject id. |
Value
The desired OMOP concept based on the user data model for all subjects