%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname mikropml %global packver 1.6.1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.6.1 Release: 1%{?dist}%{?buildtag} Summary: User-Friendly R Package for Supervised Machine Learning Pipelines License: MIT + file LICENSE URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 4.1.0 Requires: R-core >= 4.1.0 BuildArch: noarch BuildRequires: R-CRAN-caret BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-e1071 BuildRequires: R-CRAN-glmnet BuildRequires: R-CRAN-kernlab BuildRequires: R-CRAN-MLmetrics BuildRequires: R-CRAN-randomForest BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-rpart BuildRequires: R-stats BuildRequires: R-utils BuildRequires: R-CRAN-xgboost Requires: R-CRAN-caret Requires: R-CRAN-dplyr Requires: R-CRAN-e1071 Requires: R-CRAN-glmnet Requires: R-CRAN-kernlab Requires: R-CRAN-MLmetrics Requires: R-CRAN-randomForest Requires: R-CRAN-rlang Requires: R-CRAN-rpart Requires: R-stats Requires: R-utils Requires: R-CRAN-xgboost %description An interface to build machine learning models for classification and regression problems. 'mikropml' implements the ML pipeline described by Topçuoğlu et al. (2020) <doi:10.1128/mBio.00434-20> with reasonable default options for data preprocessing, hyperparameter tuning, cross-validation, testing, model evaluation, and interpretation steps. See the website <https://www.schlosslab.org/mikropml/> for more information, documentation, and examples. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}