%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname BAT %global packver 2.9.6 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 2.9.6 Release: 1%{?dist}%{?buildtag} Summary: Biodiversity Assessment Tools License: GPL-3 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.0.0 Requires: R-core >= 3.0.0 BuildArch: noarch BuildRequires: R-CRAN-ape BuildRequires: R-CRAN-geometry BuildRequires: R-graphics BuildRequires: R-CRAN-hypervolume BuildRequires: R-CRAN-MASS BuildRequires: R-methods BuildRequires: R-CRAN-nls2 BuildRequires: R-parallel BuildRequires: R-CRAN-phytools BuildRequires: R-stats BuildRequires: R-CRAN-terra BuildRequires: R-utils BuildRequires: R-CRAN-vegan Requires: R-CRAN-ape Requires: R-CRAN-geometry Requires: R-graphics Requires: R-CRAN-hypervolume Requires: R-CRAN-MASS Requires: R-methods Requires: R-CRAN-nls2 Requires: R-parallel Requires: R-CRAN-phytools Requires: R-stats Requires: R-CRAN-terra Requires: R-utils Requires: R-CRAN-vegan %description Includes algorithms to assess alpha and beta diversity in all their dimensions (taxonomic, phylogenetic and functional). It allows performing a number of analyses based on species identities/abundances, phylogenetic/functional distances, trees, convex-hulls or kernel density n-dimensional hypervolumes depicting species relationships. Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}