%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  rbioacc
%global packver   1.2.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.1
Release:          1%{?dist}%{?buildtag}
Summary:          Inference and Prediction of ToxicoKinetic (TK) Models

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-RcppParallel >= 5.0.1
BuildRequires:    R-CRAN-rstan >= 2.26.0
BuildRequires:    R-CRAN-StanHeaders >= 2.26.0
BuildRequires:    R-CRAN-rstantools >= 2.1.1
BuildRequires:    R-CRAN-BH >= 1.66.0
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.3.0
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-ggmcmc 
BuildRequires:    R-CRAN-GGally 
BuildRequires:    R-CRAN-loo 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-zoo 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-rstan >= 2.26.0
Requires:         R-CRAN-rstantools >= 2.1.1
Requires:         R-CRAN-ggplot2 
Requires:         R-methods 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-ggmcmc 
Requires:         R-CRAN-GGally 
Requires:         R-CRAN-loo 
Requires:         R-CRAN-stringr 
Requires:         R-stats 
Requires:         R-CRAN-zoo 
Requires:         R-CRAN-rstantools

%description
The MOSAICbioacc application is a turnkey package providing
bioaccumulation factors (BCF/BMF/BSAF) from a toxicokinetic (TK) model
fitted to accumulation-depuration data. It is designed to fulfil the
requirements of regulators when examining applications for market
authorization of active substances. See Ratier et al. (2021)
<doi:10.1101/2021.09.08.459421>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}