%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  APCalign
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Resolving Plant Taxon Names Using the Australian Plant Census

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-stringi 
BuildRequires:    R-CRAN-stringdist 
BuildRequires:    R-CRAN-crayon 
BuildRequires:    R-CRAN-httr 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-curl 
BuildRequires:    R-CRAN-arrow 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-stringi 
Requires:         R-CRAN-stringdist 
Requires:         R-CRAN-crayon 
Requires:         R-CRAN-httr 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-curl 
Requires:         R-CRAN-arrow 
Requires:         R-CRAN-rlang 

%description
The process of resolving taxon names is necessary when working with
biodiversity data. 'APCalign' uses the Australian Plant Census (APC) and
the Australian Plant Name Index (APNI) to align and update plant taxon
names to current, accepted standards. 'APCalign' also supplies information
about the established status of plant taxa across different
states/territories.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}