%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  htrSPRanalysis
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Analysis of Surface Plasmon Resonance Data

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-openxlsx 
BuildRequires:    R-CRAN-minpack.lm 
BuildRequires:    R-CRAN-zoo 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-grid 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-openxlsx 
Requires:         R-CRAN-minpack.lm 
Requires:         R-CRAN-zoo 
Requires:         R-stats 
Requires:         R-CRAN-gridExtra 
Requires:         R-grid 
Requires:         R-parallel 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyselect 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 

%description
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry
data, with automations for high-throughput SPR. This version of the
package fits the 1: 1 binding model, with and without bulkshift. It offers
optional local or global Rmax fitting. The user must provide a sample
sheet and a Carterra output file in Carterra's current format. There is a
utility function to convert from Carterra's old output format. The user
may run a custom pipeline or use the provided 'Runscript', which will
produce a pdf file containing fitted Rmax, ka, kd and standard errors, a
plot of the sensorgram and fits, and a plot of residuals. The script will
also produce a .csv file with all of the relevant parameters for each spot
on the SPR chip.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}