%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  gap
%global packver   1.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.6
Release:          1%{?dist}%{?buildtag}
Summary:          Genetic Analysis Package

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildRequires:    R-CRAN-gap.datasets >= 0.0.6
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-Rdpack 
Requires:         R-CRAN-gap.datasets >= 0.0.6
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-Rdpack 

%description
As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J
Stat Soft 23(8):1-18. <doi:10.18637/jss.v023.i08>], it is designed as an
integrated package for genetic data analysis of both population and family
data. Currently, it contains functions for sample size calculations of
both population-based and family-based designs, probability of familial
disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype
analysis with or without environmental covariates. Over years, the package
has been developed in-between many projects hence also in line with the
name (gap).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}