%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  dpasurv
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Dynamic Path Analysis of Survival Data via Aalen's Additive Hazards Model

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 >= 3.2.0
BuildRequires:    R-CRAN-survival >= 2.44.1.1
BuildRequires:    R-CRAN-timereg >= 1.9.4
BuildRequires:    R-CRAN-dplyr >= 0.8.3
BuildRequires:    R-CRAN-tidyr >= 0.8.3
BuildRequires:    R-CRAN-rlang >= 0.4.0
BuildRequires:    R-methods 
Requires:         R-CRAN-ggplot2 >= 3.2.0
Requires:         R-CRAN-survival >= 2.44.1.1
Requires:         R-CRAN-timereg >= 1.9.4
Requires:         R-CRAN-dplyr >= 0.8.3
Requires:         R-CRAN-tidyr >= 0.8.3
Requires:         R-CRAN-rlang >= 0.4.0
Requires:         R-methods 

%description
Dynamic path analysis with estimation of the corresponding direct,
indirect, and total effects, based on Fosen et al., (2006)
<doi:10.1007/s10985-006-9004-2>. The main outcome of interest is a
counting process from survival analysis (or recurrent events) data. At
each time of event, ordinary linear regression is used to estimate the
relation between the covariates, while Aalen's additive hazard model is
used for the regression of the counting process on the covariates.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}