%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  vglmer
%global packver   1.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Variational Inference for Hierarchical Generalized Linear Models

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.2
Requires:         R-core >= 3.0.2
BuildRequires:    R-CRAN-Rcpp >= 1.0.1
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.4.0
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-CholWishart 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-lmtest 
BuildRequires:    R-splines 
BuildRequires:    R-CRAN-mgcv 
Requires:         R-CRAN-Rcpp >= 1.0.1
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-CholWishart 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-Matrix 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-methods 
Requires:         R-CRAN-lmtest 
Requires:         R-splines 
Requires:         R-CRAN-mgcv 

%description
Estimates hierarchical models using mean-field variational Bayes. At
present, it can estimate logistic, linear, and negative binomial models.
It can accommodate models with an arbitrary number of random effects and
requires no integration to estimate. It also provides the ability to
improve the quality of the approximation using marginal augmentation.
Goplerud (2022) <doi:10.1214/21-BA1266> and Goplerud (2024)
<doi:10.1017/S0003055423000035> provide details on the variational
algorithms.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}