nc {LorMe} | R Documentation |
Calculate Network Natural Connectivity
Description
Calculate Network Natural Connectivity
Usage
nc(adj_matrix)
Arguments
adj_matrix |
Adjacency data frame or matrix. Can be calculated from |
Value
Numeric value of natural connectivity
Examples
{
### Data preparation ###
data("Two_group")
### One input network analysis ###
network_results <- network_analysis(
taxobj = Two_group,
taxlevel = "Base",
reads = FALSE,
n = 10,
threshold = 0.6
)
# Convert network results to a data frame for the adjacency matrix
network_matrix <- as.data.frame(network_results[[3]]) # Complete adjacency matrix
# Check initial natural connectivity
nc_initial <- nc(network_matrix)
print(nc_initial) # Print the initial natural connectivity
}
[Package LorMe version 1.1.0 Index]