Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1cc' (ED25519) to the list of known hosts. cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pbdMPI_0.5-2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pbdMPI_0.5-2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-pbdMPI/pbdMPI_0.5-2.tar.gz/md5/f99a248812456d71f001fef8ffd5a206/pbdMPI_0.5-2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 411k 100 411k 0 0 5933k 0 --:--:-- --:--:-- --:--:-- 5960k INFO: Reading stdout from command: md5sum pbdMPI_0.5-2.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI/R-CRAN-pbdMPI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726709901.373539 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI/R-CRAN-pbdMPI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726709901.373539 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI/R-CRAN-pbdMPI.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1726709901.373539/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 993.3 KiB/s | 28.8 KiB | 00m00s fedora 100% | 904.8 KiB/s | 24.4 KiB | 00m00s Copr repository 100% | 42.7 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 37.1 MiB/s | 11.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-9.fc41 fedora 5.6 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 41-0.21 fedora 19.4 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40-3.fc41 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1-3.fc41 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB rpm-build x86_64 4.19.92-6.fc41 fedora 194.1 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-9.fc41 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-4.fc41 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-1.fc41 fedora 2.2 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-7.fc41 fedora 153.5 KiB authselect-libs x86_64 1.5.0-7.fc41 fedora 818.3 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43-3.fc41 fedora 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 fedora 2.3 MiB coreutils-common x86_64 9.5-9.fc41 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20240826-1.gite824389.fc41 fedora 136.9 KiB curl x86_64 8.9.1-2.fc41 fedora 796.2 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.0-17.fc41 fedora 199.3 KiB dwz x86_64 0.15-7.fc41 fedora 290.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.191-8.fc41 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 fedora 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 fedora 646.2 KiB fedora-gpg-keys noarch 41-0.5 fedora 126.4 KiB fedora-release noarch 41-0.21 fedora 0.0 B fedora-release-identity-basic noarch 41-0.21 fedora 684.0 B fedora-repos noarch 41-0.5 fedora 4.9 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-23.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.1-1.fc41 fedora 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B glibc x86_64 2.40-3.fc41 fedora 6.7 MiB glibc-common x86_64 2.40-3.fc41 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40-3.fc41 fedora 8.0 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-2.fc41 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-3.fc41 fedora 922.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-4.fc41 fedora 258.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-3.fc41 fedora 67.2 KiB libcurl x86_64 8.9.1-2.fc41 fedora 818.1 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-4.fc41 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB libgcc x86_64 14.2.1-3.fc41 fedora 274.6 KiB libgomp x86_64 14.2.1-3.fc41 fedora 523.5 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-4.fc41 fedora 351.8 KiB libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-5.fc41 fedora 181.0 KiB libsemanage x86_64 3.7-2.fc41 fedora 293.5 KiB libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB libsmartcols x86_64 2.40.2-4.fc41 fedora 180.4 KiB libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc41 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.5-0.fc41 fedora 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-15.fc41 fedora 57.7 KiB libuuid x86_64 2.40.2-4.fc41 fedora 37.5 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-7.fc41 fedora 266.8 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-5.fc41 fedora 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-5.fc41 fedora 1.8 MiB pam-libs x86_64 1.6.1-5.fc41 fedora 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B readline x86_64 8.2-10.fc41 fedora 493.2 KiB rpm x86_64 4.19.92-6.fc41 fedora 3.1 MiB rpm-build-libs x86_64 4.19.92-6.fc41 fedora 206.7 KiB rpm-libs x86_64 4.19.92-6.fc41 fedora 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc41 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB systemd-libs x86_64 256.5-1.fc41 fedora 2.0 MiB util-linux-core x86_64 2.40.2-4.fc41 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 fedora 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 fedora 134.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). 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elfutils-default-y 100% | 185.7 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 86/155] Installing cpio-0:2.15-2.fc41 100% | 137.5 MiB/s | 1.1 MiB | 00m00s [ 87/155] Installing diffutils-0:3.10-8 100% | 159.0 MiB/s | 1.6 MiB | 00m00s [ 88/155] Installing libgomp-0:14.2.1-3 100% | 256.2 MiB/s | 524.8 KiB | 00m00s [ 89/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [ 90/155] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [ 91/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 92/155] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s [ 93/155] Installing pkgconf-0:2.3.0-1. 100% | 44.5 MiB/s | 91.1 KiB | 00m00s [ 94/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 95/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 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ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [105/155] Installing ca-certificates-0: 100% | 2.5 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [106/155] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s | 2.3 MiB | 00m00s [107/155] Installing libarchive-0:3.7.4 100% | 225.7 MiB/s | 924.6 KiB | 00m00s [108/155] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [109/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [110/155] Installing authselect-libs-0: 100% | 81.4 MiB/s | 833.2 KiB | 00m00s [111/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [112/155] Installing libpwquality-0:1.4 100% | 46.7 MiB/s | 430.1 KiB | 00m00s [113/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [114/155] Installing pam-0:1.6.1-5.fc41 100% | 78.2 MiB/s | 1.9 MiB | 00m00s [115/155] Installing libssh-0:0.10.6-8. 100% | 167.8 MiB/s | 515.4 KiB | 00m00s [116/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [117/155] Installing rpm-libs-0:4.19.92 100% | 176.6 MiB/s | 723.4 KiB | 00m00s [118/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [119/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [120/155] Installing libcurl-0:8.9.1-2. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [121/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [122/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [123/155] Installing elfutils-0:0.191-8 100% | 232.7 MiB/s | 2.6 MiB | 00m00s [124/155] Installing binutils-0:2.43-3. 100% | 267.5 MiB/s | 27.6 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43-3.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43-3.fc41.x86_64 [125/155] Installing gdb-minimal-0:15.1 100% | 309.3 MiB/s | 13.0 MiB | 00m00s [126/155] Installing debugedit-0:5.0-17 100% | 65.8 MiB/s | 202.0 KiB | 00m00s [127/155] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [128/155] Installing curl-0:8.9.1-2.fc4 100% | 39.0 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.92-6.fc41.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.92-6.fc41.x86_64 [129/155] Installing rpm-0:4.19.92-6.fc 100% | 86.2 MiB/s | 2.5 MiB | 00m00s [130/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [131/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [132/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 61.9 MiB/s | 190.1 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 87.2 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-4.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-4.fc41.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 270.1 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.92-6.fc41.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.92-6.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43-3.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc41.x86_64 coreutils-common-9.5-9.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240826-1.gite824389.fc41.noarch curl-8.9.1-2.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-41-0.5.noarch fedora-release-41-0.21.noarch fedora-release-common-41-0.21.noarch fedora-release-identity-basic-41-0.21.noarch fedora-repos-41-0.5.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-4.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-2.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-4.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.2.1-3.fc41.x86_64 libgomp-14.2.1-3.fc41.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-4.fc41.x86_64 libnghttp2-1.62.1-2.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-4.fc41.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-3.fc41.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.2-4.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-5.fc41.x86_64 pam-libs-1.6.1-5.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-293-1.fc41.noarch rpm-4.19.92-6.fc41.x86_64 rpm-build-4.19.92-6.fc41.x86_64 rpm-build-libs-4.19.92-6.fc41.x86_64 rpm-libs-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-4.fc41.x86_64 util-linux-core-2.40.2-4.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-x86_64-1726709901.373539/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1726709901.373539/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-3v7af9ri/R-CRAN-pbdMPI/R-CRAN-pbdMPI.spec) Config(child) 0 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm) Config(fedora-41-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1726709901.373539/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm Start: build setup for R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: updates 100% | 872.9 KiB/s | 28.8 KiB | 00m00s fedora 100% | 842.4 KiB/s | 24.4 KiB | 00m00s Copr repository 100% | 39.4 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 36.3 MiB/s | 11.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-float x86_64 0.3.2-1.fc41.copr7350977 copr_base 5.2 MiB R-core x86_64 4.4.1-5.fc41 fedora 101.5 MiB R-devel x86_64 4.4.1-5.fc41 fedora 0.0 B openmpi-devel x86_64 5.0.5-2.fc41 fedora 3.2 MiB Installing dependencies: R-core-devel x86_64 4.4.1-5.fc41 fedora 394.7 KiB R-java x86_64 4.4.1-5.fc41 fedora 0.0 B R-java-devel x86_64 4.4.1-5.fc41 fedora 0.0 B R-rpm-macros noarch 1.2.1-11.fc41 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB alsa-lib x86_64 1.2.12-2.fc41 fedora 1.4 MiB annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB avahi-libs x86_64 0.8-29.fc41 fedora 166.3 KiB brotli x86_64 1.1.0-5.fc41 fedora 31.8 KiB brotli-devel x86_64 1.1.0-5.fc41 fedora 65.6 KiB bzip2-devel x86_64 1.0.8-19.fc41 fedora 309.8 KiB cairo x86_64 1.18.0-4.fc41 fedora 1.7 MiB cairo-devel x86_64 1.18.0-4.fc41 fedora 2.3 MiB cmake-filesystem x86_64 3.28.3-7.fc41 fedora 0.0 B copy-jdk-configs noarch 4.1-6.fc41 fedora 20.3 KiB cpp x86_64 14.2.1-3.fc41 fedora 35.0 MiB cups-libs x86_64 1:2.4.10-6.fc41 fedora 622.9 KiB dbus x86_64 1:1.14.10-4.fc41 fedora 0.0 B dbus-broker x86_64 36-4.fc41 fedora 382.8 KiB dbus-common noarch 1:1.14.10-4.fc41 fedora 11.2 KiB dbus-libs x86_64 1:1.14.10-4.fc41 fedora 368.9 KiB default-fonts-core-sans noarch 4.1-2.fc41 fedora 11.9 KiB desktop-file-utils x86_64 0.27-2.fc41 fedora 230.4 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B environment-modules x86_64 5.4.0-2.fc41 fedora 1.7 MiB expat x86_64 2.6.2-2.fc41 fedora 284.8 KiB flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-devel x86_64 3.4.4-3.fc41 fedora 4.8 MiB flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB flexiblas-netlib64 x86_64 3.4.4-3.fc41 fedora 10.8 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.4-3.fc41 fedora 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB fontconfig-devel x86_64 2.15.0-8.fc41 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype x86_64 2.13.2-6.fc41 fedora 850.6 KiB freetype-devel x86_64 2.13.2-6.fc41 fedora 7.8 MiB fribidi x86_64 1.0.15-2.fc41 fedora 368.4 KiB gcc x86_64 14.2.1-3.fc41 fedora 104.3 MiB gcc-c++ x86_64 14.2.1-3.fc41 fedora 38.2 MiB gcc-gfortran x86_64 14.2.1-3.fc41 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-3.fc41 fedora 61.1 KiB gettext x86_64 0.22.5-6.fc41 fedora 5.2 MiB gettext-envsubst x86_64 0.22.5-6.fc41 fedora 74.9 KiB gettext-libs x86_64 0.22.5-6.fc41 fedora 1.7 MiB gettext-runtime x86_64 0.22.5-6.fc41 fedora 481.3 KiB glib2 x86_64 2.82.0-1.fc41 fedora 14.7 MiB glib2-devel x86_64 2.82.0-1.fc41 fedora 15.7 MiB glibc-devel x86_64 2.40-3.fc41 fedora 35.0 KiB glibc-headers-x86 noarch 2.40-3.fc41 fedora 2.2 MiB gnutls x86_64 3.8.6-7.fc41 fedora 3.2 MiB google-noto-fonts-common noarch 20240701-2.fc41 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240701-2.fc41 fedora 1.2 MiB graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB graphite2-devel x86_64 1.3.14-16.fc41 fedora 49.1 KiB groff-base x86_64 1.23.0-7.fc41 fedora 3.8 MiB harfbuzz x86_64 9.0.0-3.fc41 fedora 2.6 MiB harfbuzz-cairo x86_64 9.0.0-3.fc41 fedora 48.2 KiB harfbuzz-devel x86_64 9.0.0-3.fc41 fedora 5.1 MiB harfbuzz-icu x86_64 9.0.0-3.fc41 fedora 19.5 KiB hwloc-libs x86_64 2.11.1-2.fc41 fedora 2.9 MiB java-21-openjdk x86_64 1:21.0.4.0.7-2.fc41 fedora 1.1 MiB java-21-openjdk-devel x86_64 1:21.0.4.0.7-2.fc41 fedora 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.4.0.7-2.fc41 fedora 204.9 MiB javapackages-filesystem noarch 6.2.0-14.fc41 fedora 1.9 KiB jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB kernel-headers x86_64 6.11.0-63.fc41 fedora 6.4 MiB less x86_64 661-2.fc41 fedora 405.3 KiB libICE x86_64 1.1.1-4.fc41 fedora 181.2 KiB libRmath x86_64 4.4.1-5.fc41 fedora 246.8 KiB libRmath-devel x86_64 4.4.1-5.fc41 fedora 17.4 KiB libSM x86_64 1.2.4-4.fc41 fedora 97.3 KiB libX11 x86_64 1.8.10-2.fc41 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc41 fedora 1.1 MiB libX11-devel x86_64 1.8.10-2.fc41 fedora 1.0 MiB libX11-xcb x86_64 1.8.10-2.fc41 fedora 15.0 KiB libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB libXau-devel x86_64 1.0.11-7.fc41 fedora 6.4 KiB libXcomposite x86_64 0.4.6-4.fc41 fedora 44.5 KiB libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB libXext-devel x86_64 1.3.6-2.fc41 fedora 98.9 KiB libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB libXft-devel x86_64 2.3.8-7.fc41 fedora 31.7 KiB libXi x86_64 1.8.1-6.fc41 fedora 80.7 KiB libXmu x86_64 1.2.1-2.fc41 fedora 191.5 KiB libXrender x86_64 0.9.11-7.fc41 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-7.fc41 fedora 50.1 KiB libXt x86_64 1.3.0-4.fc41 fedora 429.9 KiB libXtst x86_64 1.2.5-1.fc41 fedora 33.6 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libblkid-devel x86_64 2.40.2-4.fc41 fedora 44.9 KiB libcbor x86_64 0.11.0-2.fc41 fedora 73.9 KiB libdatrie x86_64 0.2.13-10.fc41 fedora 57.9 KiB libdeflate x86_64 1.21-2.fc41 fedora 117.0 KiB libdeflate-devel x86_64 1.21-2.fc41 fedora 25.7 KiB libedit x86_64 3.1-53.20240808cvs.fc41 fedora 244.1 KiB libfabric x86_64 1.22.0-1.fc41 fedora 5.2 MiB libffi-devel x86_64 3.4.6-3.fc41 fedora 33.1 KiB libfido2 x86_64 1.15.0-2.fc41 fedora 238.2 KiB libfontenc x86_64 1.1.8-2.fc41 fedora 67.0 KiB libgfortran x86_64 14.2.1-3.fc41 fedora 3.0 MiB libibverbs x86_64 51.0-4.fc41 fedora 1.2 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-3.fc41 fedora 776.9 KiB liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB libmount-devel x86_64 2.40.2-4.fc41 fedora 63.5 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libnl3 x86_64 3.10.0-1.fc41 fedora 1.0 MiB libpipeline x86_64 1.5.7-6.fc41 fedora 124.3 KiB libpng x86_64 2:1.6.40-4.fc41 fedora 245.8 KiB libpng-devel x86_64 2:1.6.40-4.fc41 fedora 881.5 KiB libpsm2 x86_64 11.2.230-5.fc41 fedora 442.5 KiB libquadmath x86_64 14.2.1-3.fc41 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-3.fc41 fedora 21.9 KiB librdmacm x86_64 51.0-4.fc41 fedora 146.2 KiB libseccomp x86_64 2.5.5-2.fc41 fedora 173.3 KiB libselinux-devel x86_64 3.7-5.fc41 fedora 126.4 KiB libsepol-devel x86_64 3.7-2.fc41 fedora 120.3 KiB libstdc++-devel x86_64 14.2.1-3.fc41 fedora 15.4 MiB libtextstyle x86_64 0.22.5-6.fc41 fedora 195.6 KiB libthai x86_64 0.1.29-9.fc41 fedora 783.5 KiB libtiff x86_64 4.6.0-6.fc41 fedora 606.0 KiB libtirpc-devel x86_64 1.3.5-0.fc41 fedora 251.6 KiB libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB libxcb x86_64 1.17.0-2.fc41 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-2.fc41 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.36-7.fc41 fedora 30.3 KiB libxml2-devel x86_64 2.12.8-2.fc41 fedora 3.4 MiB lksctp-tools x86_64 1.0.19-9.fc41 fedora 275.2 KiB logrotate x86_64 3.22.0-2.fc41 fedora 153.1 KiB lua x86_64 5.4.6-6.fc41 fedora 601.7 KiB lua-posix x86_64 36.2.1-7.fc41 fedora 599.8 KiB make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB man-db x86_64 2.12.1-2.fc41 fedora 2.8 MiB mkfontscale x86_64 1.2.3-1.fc41 fedora 49.2 KiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB munge x86_64 0.5.16-3.fc41 fedora 346.3 KiB munge-libs x86_64 0.5.16-3.fc41 fedora 32.1 KiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB nspr x86_64 4.35.0-28.fc41 fedora 320.4 KiB nss x86_64 3.103.0-1.fc41 fedora 1.9 MiB nss-softokn x86_64 3.103.0-1.fc41 fedora 1.9 MiB nss-softokn-freebl x86_64 3.103.0-1.fc41 fedora 783.6 KiB nss-sysinit x86_64 3.103.0-1.fc41 fedora 22.2 KiB nss-util x86_64 3.103.0-1.fc41 fedora 205.1 KiB numactl-libs x86_64 2.0.18-2.fc41 fedora 61.0 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB openblas-openmp64 x86_64 0.3.26-5.fc41 fedora 39.5 MiB openmpi x86_64 5.0.5-2.fc41 fedora 7.0 MiB openssh x86_64 9.8p1-3.fc41 fedora 1.8 MiB openssh-clients x86_64 9.8p1-3.fc41 fedora 2.6 MiB orangefs x86_64 2.9.8-12.fc41 fedora 3.1 MiB pango x86_64 1.54.0-2.fc41 fedora 996.2 KiB pcre2-devel x86_64 10.44-1.fc41.1 fedora 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc41.1 fedora 590.1 KiB pcre2-utf32 x86_64 10.44-1.fc41.1 fedora 562.0 KiB pixman x86_64 0.43.4-2.fc41 fedora 718.1 KiB pixman-devel x86_64 0.43.4-2.fc41 fedora 49.4 KiB pmix x86_64 4.2.8-3.fc41 fedora 2.0 MiB procps-ng x86_64 4.0.4-4.fc41 fedora 1.0 MiB prrte x86_64 3.0.2-6.fc41 fedora 240.2 KiB prrte-libs x86_64 3.0.2-6.fc41 fedora 1.5 MiB python-pip-wheel noarch 24.2-1.fc41 fedora 1.2 MiB python3 x86_64 3.13.0~rc2-1.fc41 fedora 31.8 KiB python3-libs x86_64 3.13.0~rc2-1.fc41 fedora 40.3 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB rpm-mpi-hooks noarch 8-10.fc41 fedora 8.7 KiB sysprof-capture-devel x86_64 47~beta-1.fc41 fedora 252.6 KiB systemd x86_64 256.5-1.fc41 fedora 16.9 MiB systemd-pam x86_64 256.5-1.fc41 fedora 1.1 MiB systemd-rpm-macros noarch 256.5-1.fc41 fedora 9.3 KiB tcl x86_64 1:8.6.14-2.fc41 fedora 4.2 MiB tcl-devel x86_64 1:8.6.14-2.fc41 fedora 791.3 KiB tcsh x86_64 6.24.13-1.fc41 fedora 1.2 MiB tk x86_64 1:8.6.14-2.fc41 fedora 3.6 MiB tk-devel x86_64 1:8.6.14-2.fc41 fedora 984.9 KiB torque-libs x86_64 6.1.3-12.fc41 fedora 454.1 KiB tre x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 75.9 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB tre-devel x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-71.fc41 fedora 122.7 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB tzdata-java noarch 2024a-9.fc41 fedora 101.7 KiB ucx x86_64 1.17.0-2.fc41 fedora 2.4 MiB vim-filesystem noarch 2:9.1.719-1.fc41 fedora 40.0 B xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel x86_64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel x86_64 2.1.7-2.fc41 fedora 106.8 KiB Transaction Summary: Installing: 199 packages Total size of inbound packages is 299 MiB. 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post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 >>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64 >>> Running pre-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Stop pre-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 [126/201] Installing man-db-0:2.12.1-2. 100% | 61.7 MiB/s | 2.8 MiB | 00m00s >>> Running post-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Stop post-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 [127/201] Installing libcbor-0:0.11.0-2 100% | 36.8 MiB/s | 75.3 KiB | 00m00s [128/201] Installing libfido2-0:1.15.0- 100% | 117.1 MiB/s | 239.7 KiB | 00m00s [129/201] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [130/201] Installing libdatrie-0:0.2.13 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [131/201] Installing libthai-0:0.1.29-9 100% | 109.6 MiB/s | 785.3 KiB | 00m00s [132/201] Installing nettle-0:3.10-3.fc 100% | 194.4 MiB/s | 796.1 KiB | 00m00s [133/201] Installing gnutls-0:3.8.6-7.f 100% | 230.3 MiB/s | 3.2 MiB | 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java-21-openjdk-headless-1:21.0.4.0.7-2.fc41.x8 >>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch >>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch [145/201] Installing xml-common-0:0.6.3 100% | 26.4 MiB/s | 81.1 KiB | 00m00s [146/201] Installing fontconfig-0:2.15. 100% | 780.7 KiB/s | 811.1 KiB | 00m01s >>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 [147/201] Installing xorg-x11-fonts-Typ 100% | 14.3 MiB/s | 865.6 KiB | 00m00s >>> Running post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-39.fc41.noarch >>> Stop post-install scriptlet: xorg-x11-fonts-Type1-0:7.5-39.fc41.noarch [148/201] Installing vim-filesystem-2:9 100% | 1.5 MiB/s | 4.7 KiB | 00m00s [149/201] Installing environment-module 100% | 57.2 MiB/s | 1.7 MiB | 00m00s >>> Running post-install scriptlet: environment-modules-0:5.4.0-2.fc41.x86_64 >>> Stop post-install scriptlet: environment-modules-0:5.4.0-2.fc41.x86_64 [150/201] Installing rpm-mpi-hooks-0:8- 100% | 9.5 MiB/s | 9.7 KiB | 00m00s [151/201] Installing tcsh-0:6.24.13-1.f 100% | 47.9 MiB/s | 1.2 MiB | 00m00s >>> Running post-install scriptlet: tcsh-0:6.24.13-1.fc41.x86_64 >>> Stop post-install scriptlet: tcsh-0:6.24.13-1.fc41.x86_64 [152/201] Installing orangefs-0:2.9.8-1 100% | 172.8 MiB/s | 3.1 MiB | 00m00s [153/201] Installing openssh-0:9.8p1-3. 100% | 222.3 MiB/s | 1.8 MiB | 00m00s [154/201] Installing libedit-0:3.1-53.2 100% | 120.0 MiB/s | 245.8 KiB | 00m00s [155/201] Installing openssh-clients-0: 100% | 65.0 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.8p1-3.fc41.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.8p1-3.fc41.x86_64 [156/201] Installing tre-common-0:0.8.0 100% | 40.6 MiB/s | 83.1 KiB | 00m00s [157/201] Installing tre-0:0.8.0-45.201 100% | 74.9 MiB/s | 76.7 KiB | 00m00s [158/201] Installing tre-devel-0:0.8.0- 100% | 11.3 MiB/s | 11.6 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tk-1:8.6.14-2.fc41.x86_64 >>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64 [171/201] Installing tk-1:8.6.14-2.fc41 100% | 146.4 MiB/s | 3.7 MiB | 00m00s [172/201] Installing libXrender-devel-0 100% | 49.8 MiB/s | 51.0 KiB | 00m00s [173/201] Installing libXi-0:1.8.1-6.fc 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [174/201] Installing libXt-0:1.3.0-4.fc 100% | 140.3 MiB/s | 431.1 KiB | 00m00s [175/201] Installing libXmu-0:1.2.1-2.f 100% | 94.5 MiB/s | 193.5 KiB | 00m00s [176/201] Installing libXtst-0:1.2.5-1. 100% | 33.8 MiB/s | 34.7 KiB | 00m00s [177/201] Installing pango-0:1.54.0-2.f 100% | 25.7 MiB/s | 1.0 MiB | 00m00s [178/201] Installing R-core-0:4.4.1-5.f 100% | 138.0 MiB/s | 103.7 MiB | 00m01s [179/201] Installing R-rpm-macros-0:1.2 100% | 6.4 MiB/s | 6.6 KiB | 00m00s [180/201] Installing R-java-0:4.4.1-5.f 100% | 0.0 B/s | 124.0 B | 00m00s [181/201] Installing libXext-devel-0:1. 100% | 27.1 MiB/s | 110.9 KiB | 00m00s [182/201] Installing harfbuzz-cairo-0:9 100% | 24.0 MiB/s | 49.1 KiB | 00m00s [183/201] Installing fontconfig-devel-0 100% | 16.5 MiB/s | 151.9 KiB | 00m00s [184/201] Installing freetype-devel-0:2 100% | 280.6 MiB/s | 7.9 MiB | 00m00s [185/201] Installing cairo-devel-0:1.18 100% | 229.1 MiB/s | 2.3 MiB | 00m00s [186/201] Installing harfbuzz-devel-0:9 100% | 242.8 MiB/s | 5.1 MiB | 00m00s [187/201] Installing libXft-devel-0:2.3 100% | 10.8 MiB/s | 44.3 KiB | 00m00s [188/201] Installing tk-devel-1:8.6.14- 100% | 84.2 MiB/s | 1.0 MiB | 00m00s [189/201] Installing R-core-devel-0:4.4 100% | 98.0 MiB/s | 401.3 KiB | 00m00s [190/201] Installing libXcomposite-0:0. 100% | 45.0 MiB/s | 46.1 KiB | 00m00s [191/201] Installing java-21-openjdk-1: 100% | 51.6 MiB/s | 1.1 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64 >>> Stop post-install scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64 [192/201] Installing java-21-openjdk-de 100% | 249.7 MiB/s | 11.2 MiB | 00m00s >>> Running post-install scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x8 >>> Stop post-install scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x86_6 [193/201] Installing R-java-devel-0:4.4 100% | 121.1 KiB/s | 124.0 B | 00m00s [194/201] Installing ucx-0:1.17.0-2.fc4 100% | 170.8 MiB/s | 2.4 MiB | 00m00s [195/201] Installing openmpi-0:5.0.5-2. 100% | 225.8 MiB/s | 7.0 MiB | 00m00s [196/201] Installing openmpi-devel-0:5. 100% | 90.4 MiB/s | 3.3 MiB | 00m00s [197/201] Installing R-devel-0:4.4.1-5. 100% | 121.1 KiB/s | 124.0 B | 00m00s [198/201] Installing R-CRAN-float-0:0.3 100% | 185.7 MiB/s | 5.2 MiB | 00m00s [199/201] Installing annobin-plugin-gcc 100% | 37.1 MiB/s | 986.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch [200/201] Installing gcc-plugin-annobin 100% | 2.3 MiB/s | 62.6 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch [201/201] Installing systemd-rpm-macros 100% | 15.2 KiB/s | 9.9 KiB | 00m01s >>> Running post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch >>> Stop post-transaction scriptlet: copy-jdk-configs-0:4.1-6.fc41.noarch >>> Running post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2. >>> Stop post-transaction scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc4 >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_ >>> Stop post-transaction scriptlet: java-21-openjdk-1:21.0.4.0.7-2.fc41.x86_64 >>> Running post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc4 >>> Stop post-transaction scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Stop trigger-install scriptlet: systemd-0:256.5-1.fc41.x86_64 >>> Running trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Stop trigger-install scriptlet: man-db-0:2.12.1-2.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64 >>> Running trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64 >>> Stop trigger-install scriptlet: desktop-file-utils-0:0.27-2.fc41.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Warning: skipped PGP checks for 1 package(s). Finish: build setup for R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm Start: rpmbuild R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.hInWYD + umask 022 + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + test -d /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + /usr/bin/rm -rf /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.exbuDF + umask 022 + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + rm -rf pbdMPI + /usr/bin/mkdir -p pbdMPI + cd pbdMPI + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pbdMPI_0.5-2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d pbdMPI/src ']' + find pbdMPI/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d pbdMPI/src ']' + find pbdMPI/src/Makevars.in pbdMPI/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LtTtp2 + umask 022 + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pbdMPI + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jFebhu + umask 022 + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + '[' /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + mkdir /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pbdMPI + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; CMAKE_PREFIX_PATH=/usr/lib64/openmpi; export CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.13/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe + export MPI_LIB_PATH=/usr/lib64/openmpi/lib + MPI_LIB_PATH=/usr/lib64/openmpi/lib + export MPI_TYPE=OPENMPI + MPI_TYPE=OPENMPI + mkdir -p /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT/usr/local/lib/R/library pbdMPI * installing *source* package ‘pbdMPI’ ... ** package ‘pbdMPI’ successfully unpacked and MD5 sums checked ** using staged installation setting mpi include path from MPI_INCLUDE setting mpi lib path from MPI_LIB_PATH checking for sed... /usr/bin/sed checking for mpicc... mpicc checking for ompi_info... ompi_info checking for pkg-config... /usr/bin/pkg-config >> TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ... checking for openpty in -lutil... yes checking for main in -lpthread... yes which: no orterun in (/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin) ---------------------------- /usr/share/modulefiles ---------------------------- mpi/openmpi-x86_64 Key: =loaded ******************* Results of pbdMPI package configure ***************** >> MPIRUN = /usr/lib64/openmpi/bin/mpirun >> MPIEXEC = /usr/lib64/openmpi/bin/mpiexec >> ORTERUN = >> TMP_INC = >> TMP_LIB = >> TMP_LIBNAME = >> TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ... >> MPI_ROOT = >> MPITYPE = OPENMPI >> MPI_INCLUDE_PATH = /usr/include/openmpi-x86_64 >> MPI_LIBPATH = /usr/lib64/openmpi/lib >> MPI_LIBNAME = >> MPI_LIBS = -lutil -lpthread >> MPI_DEFS = -DMPI2 >> MPI_INCL2 = >> MPI_LDFLAGS = >> PKG_CPPFLAGS = -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI >> PKG_LIBS = -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread >> PROF_LDFLAGS = >> ENABLE_LD_LIBRARY_PATH = no ************************************************************************* configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.r config.status: creating R/util_execmpi.r ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ echo "MPIRUN = /usr/lib64/openmpi/bin/mpirun" > Makeconf echo "MPIEXEC = /usr/lib64/openmpi/bin/mpiexec" >> Makeconf echo "ORTERUN = " >> Makeconf echo "TMP_INC = " >> Makeconf echo "TMP_LIB = " >> Makeconf echo "TMP_LIBNAME = " >> Makeconf echo "TMP_FOUND = Nothing found from mpicc --show & sed nor pkg-config ..." >> Makeconf echo "MPI_ROOT = " >> Makeconf echo "MPITYPE = OPENMPI" >> Makeconf echo "MPI_INCLUDE_PATH = /usr/include/openmpi-x86_64" >> Makeconf echo "MPI_LIBPATH = /usr/lib64/openmpi/lib" >> Makeconf echo "MPI_LIBNAME = " >> Makeconf echo "MPI_LIBS = -lutil -lpthread" >> Makeconf echo "MPI_DEFS = -DMPI2" >> Makeconf echo "MPI_INCL2 = " >> Makeconf echo "MPI_LDFLAGS = " >> Makeconf echo "PKG_CPPFLAGS = -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI" >> Makeconf echo "PKG_LIBS = -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread" >> Makeconf echo "PROF_LDFLAGS = " >> Makeconf echo "ENABLE_LD_LIBRARY_PATH = no" >> Makeconf gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c comm_errors.c -o comm_errors.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c comm_sort_double.c -o comm_sort_double.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c comm_sort_integer.c -o comm_sort_integer.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pkg_dl.c -o pkg_dl.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pkg_tools.c -o pkg_tools.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd.c -o spmd.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_allgather.c -o spmd_allgather.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_allgatherv.c -o spmd_allgatherv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_allreduce.c -o spmd_allreduce.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_alltoall.c -o spmd_alltoall.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_alltoallv.c -o spmd_alltoallv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_bcast.c -o spmd_bcast.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_communicator.c -o spmd_communicator.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_communicator_spawn.c -o spmd_communicator_spawn.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_gather.c -o spmd_gather.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_gatherv.c -o spmd_gatherv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_info.c -o spmd_info.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_recv.c -o spmd_recv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_reduce.c -o spmd_reduce.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_scatter.c -o spmd_scatter.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_scatterv.c -o spmd_scatterv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_send.c -o spmd_send.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_sendrecv.c -o spmd_sendrecv.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_sendrecv_replace.c -o spmd_sendrecv_replace.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_tool.c -o spmd_tool.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_utility.c -o spmd_utility.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spmd_wait.c -o spmd_wait.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include/openmpi-x86_64 -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zzz.c -o zzz.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o pbdMPI.so comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o -L/usr/lib64/openmpi/lib -lmpi -lutil -lpthread -L/usr/lib64/R/lib -lR installing via 'install.libs.R' to /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT/usr/local/lib/R/library/00LOCK-pbdMPI/00new/pbdMPI ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘pbdMPI’ finding HTML links ... done 00_pbdMPI-package html 11_d_control html 11_d_pbd_opt html aa_allgather-method html aa_allreduce-method html aa_bcast-method html aa_gather-method html aa_reduce-method html aa_scatter-method html ab_recv-method html ab_send-method html ac_irecv-method html ac_isend-method html ad_sendrecv-method html ad_sendrecv.replace-method html ae_alltoall html cc_arrange.mpi.apts html cc_comm html cc_comm.chunk html dd_info html dd_is.comm.null html dd_prob html dd_sourcetag html dd_wait html uu_execmpi html vv_get_jid html vv_print_cat html vv_seed html ww_comm_as_gbd html ww_comm_balance html ww_comm_read html ww_comm_write html xx_comm_Rprof html xx_comm_allpairs html xx_comm_any_all html xx_comm_base html xx_comm_dist html xx_comm_match_arg html xx_comm_pairwise html xx_comm_range html xx_comm_sort html xx_comm_stop_warning html xx_comm_timer html xx_comm_which html yy_api_apply html yy_api_task_pull html yy_get_conf_lib_winmpi html yy_pkg_tools html zz_comm_internal html zz_spmd_control html zz_spmd_internal html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdMPI) + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; unset MPI_MAN; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset _LMFILES_; unset LOADEDMODULES; unset CMAKE_PREFIX_PATH; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + test -d pbdMPI/src + cd pbdMPI/src + rm -f comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o pbdMPI.so + rm -f /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.5.2-1.fc41.copr8032944 --unique-debug-suffix -0.5.2-1.fc41.copr8032944.x86_64 --unique-debug-src-base R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/pbdMPI find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.x86_64 282 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_long_vector/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_long_vector/00_test_all.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_parallel/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_parallel/00_test_all.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_performance/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_performance/00_test_all.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_rmpi/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_rmpi/00_test_spmd.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_s4/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_s4/00_test_all.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_send_recv/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_send_recv/00_test_all.win from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_spmd/00_test_all.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/local/lib/R/library/pbdMPI/examples/test_spmd/00_test_all.win from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT Scanned 41 directories and 626 files, processed 445 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.x86_64 Provides: R-CRAN-pbdMPI = 0.5.2-1.fc41.copr8032944 R-CRAN-pbdMPI(x86-64) = 0.5.2-1.fc41.copr8032944 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-pbdMPI-debugsource-0.5.2-1.fc41.copr8032944.x86_64 Provides: R-CRAN-pbdMPI-debugsource = 0.5.2-1.fc41.copr8032944 R-CRAN-pbdMPI-debugsource(x86-64) = 0.5.2-1.fc41.copr8032944 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-pbdMPI-debuginfo-0.5.2-1.fc41.copr8032944.x86_64 Provides: R-CRAN-pbdMPI-debuginfo = 0.5.2-1.fc41.copr8032944 R-CRAN-pbdMPI-debuginfo(x86-64) = 0.5.2-1.fc41.copr8032944 debuginfo(build-id) = 60becb5f2e3b1929dce8dee06f8cd2e4927fc778 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-pbdMPI-debugsource(x86-64) = 0.5.2-1.fc41.copr8032944 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-pbdMPI-debuginfo-0.5.2-1.fc41.copr8032944.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-pbdMPI-debugsource-0.5.2-1.fc41.copr8032944.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9XAJL3 + umask 022 + cd /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + test -d /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + rm -rf /builddir/build/BUILD/R-CRAN-pbdMPI-0.5.2-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm Finish: build phase for R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1726709901.373539/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-pbdMPI-0.5.2-1.fc41.copr8032944.src.rpm) Config(child) 0 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-pbdMPI", "epoch": null, "version": "0.5.2", "release": "1.fc41.copr8032944", "arch": "src" }, { "name": "R-CRAN-pbdMPI-debugsource", "epoch": null, "version": "0.5.2", "release": "1.fc41.copr8032944", "arch": "x86_64" }, { "name": "R-CRAN-pbdMPI", "epoch": null, "version": "0.5.2", "release": "1.fc41.copr8032944", "arch": "x86_64" }, { "name": "R-CRAN-pbdMPI-debuginfo", "epoch": null, "version": "0.5.2", "release": "1.fc41.copr8032944", "arch": "x86_64" } ] } RPMResults finished