get_fine_mapping {gtexr} | R Documentation |
Get Fine Mapping
Description
Retrieve Fine Mapping Data
Finds and returns
Fine Mapping
data for the provided list of genesBy default, this endpoint fetches data from the latest
GTEx
version
The retrieved data is split into pages with items_per_page
entries per page
Usage
get_fine_mapping(
gencodeIds,
datasetId = "gtex_v8",
variantId = NULL,
tissueSiteDetailIds = NULL,
page = 0,
itemsPerPage = 250
)
Arguments
gencodeIds |
A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5"). |
datasetId |
String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot". |
variantId |
String. A gtex variant ID. |
tissueSiteDetailIds |
Character vector of IDs for tissues of interest.
Can be GTEx specific IDs (e.g. "Whole_Blood"; use
|
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). |
Value
A tibble.
See Also
Other Static Association Endpoints:
get_eqtl_genes()
,
get_independent_eqtl()
,
get_multi_tissue_eqtls()
,
get_significant_single_tissue_eqtls()
,
get_significant_single_tissue_eqtls_by_location()
,
get_significant_single_tissue_ieqtls()
,
get_significant_single_tissue_isqtls()
,
get_significant_single_tissue_sqtls()
,
get_sqtl_genes()
Examples
## Not run:
# search by gene
get_fine_mapping(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"))
# optionally filter for a single variant and/or one or more tissues
get_fine_mapping(gencodeIds = c("ENSG00000132693.12",
"ENSG00000203782.5"),
variantId = "chr1_153228363_A_G_b38",
tissueSiteDetailIds = c("Whole_Blood",
"Thyroid"))
## End(Not run)